| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,958,452 – 19,958,526 |
| Length | 74 |
| Max. P | 0.512571 |
| Location | 19,958,452 – 19,958,526 |
|---|---|
| Length | 74 |
| Sequences | 3 |
| Columns | 74 |
| Reading direction | reverse |
| Mean pairwise identity | 80.91 |
| Shannon entropy | 0.26621 |
| G+C content | 0.37410 |
| Mean single sequence MFE | -17.47 |
| Consensus MFE | -11.49 |
| Energy contribution | -11.17 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.512571 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19958452 74 - 22422827 ACUUUCUUCUACAAUUUCUUUAUGAGAUUUUGAAUCUUCAAAACUAUUUGUCUCGUUGGCAAGGGGAGAACUAA ...(((((((.(((..((((...))))..)))..............((((((.....))))))))))))).... ( -14.70, z-score = -1.51, R) >droYak2.chrX 10316315 72 + 21770863 GCUUUUUCCCACAAUUUCUUUAUGAGAU--UGAAUCUUCAGAACUAUUUGUCUCGUUGGCGAGGGGAGAACUAA ...(((((((.(((((((.....)))))--))...................((((....))))))))))).... ( -20.40, z-score = -2.44, R) >droEre2.scaffold_4690 10104079 66 - 18748788 --CCUCUUCAAAAAUUUCUUUAUGAGAU--UGAAUCUUUGGA----UUCGUCUCGUUGGCGAGGGGCGAACUAA --((((.(((...........(((((((--.(((((....))----))))))))))))).)))).......... ( -17.30, z-score = -1.49, R) >consensus _CUUUCUUCAACAAUUUCUUUAUGAGAU__UGAAUCUUCAGAACUAUUUGUCUCGUUGGCGAGGGGAGAACUAA ....((((((...(((((.....)))))..................((((((.....))))))))))))..... (-11.49 = -11.17 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:44 2011