| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,947,617 – 19,947,697 |
| Length | 80 |
| Max. P | 0.904036 |
| Location | 19,947,617 – 19,947,697 |
|---|---|
| Length | 80 |
| Sequences | 4 |
| Columns | 84 |
| Reading direction | forward |
| Mean pairwise identity | 79.27 |
| Shannon entropy | 0.32995 |
| G+C content | 0.46916 |
| Mean single sequence MFE | -21.98 |
| Consensus MFE | -17.58 |
| Energy contribution | -17.82 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.904036 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19947617 80 + 22422827 UCAUUUGUCCACGAAAACUUUUGCCUUUGGCGACUGCCUGUUGGUUUGUUUGUCUGUAUG----CCACUUUGGAGGACGAAGGA ((.((((((((((.((((....(((...(((....)))....)))..))))...)))...----((.....)).))))))).)) ( -19.90, z-score = -0.49, R) >droEre2.scaffold_4690 10094044 65 + 18748788 CCUUUUGUUCACCAUAACUUUUGCCUCCGGCGACCGCCAGUUGGUUUGUUG-------------------UGCAGGACGAAGGA .(((((((((..((((((....(((..((((....))).)..)))..))))-------------------))..))))))))). ( -23.70, z-score = -2.87, R) >droYak2.chrX 10305729 84 - 21770863 UCAUUUGUUCACCUAAACUUUUGCCUUUGGCGACUGCCUGUUGGUUUGUUUGUCUGUAUGUAUGCCAGUUUGGAGGACGAAUGA ((((((((((.((.(((((..(((....((((((.(((....)))..).))))).....)))....))))))).)))))))))) ( -23.90, z-score = -2.41, R) >droSec1.super_8 2173816 80 + 3762037 UCAUUUGUCCACGAAAACUUUUGCCUUUGGCGACUGCCUGUUGGUUUGUUUGUCUCUAUG----CCACUUUGGAGGACGAAGGA ((.(((((((..((((((....(((...(((....)))....)))..)))).))((((..----......))))))))))).)) ( -20.40, z-score = -0.81, R) >consensus UCAUUUGUCCACCAAAACUUUUGCCUUUGGCGACUGCCUGUUGGUUUGUUUGUCUGUAUG____CCACUUUGGAGGACGAAGGA .(((((((((....((((....(((...(((....)))....)))..)))).............((.....)).))))))))). (-17.58 = -17.82 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:43 2011