Locus 15611

Sequence ID dm3.chrX
Location 19,924,808 – 19,924,916
Length 108
Max. P 0.857791
window21525

overview

Window 5

Location 19,924,808 – 19,924,916
Length 108
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 77.50
Shannon entropy 0.31511
G+C content 0.36128
Mean single sequence MFE -29.50
Consensus MFE -17.72
Energy contribution -18.07
Covariance contribution 0.34
Combinations/Pair 1.15
Mean z-score -2.27
Structure conservation index 0.60
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.94
SVM RNA-class probability 0.857791
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19924808 108 + 22422827
UCCUUGAUUGAUUGAAUGGAAUU-GAUUGGAUGACUAAUGGGUAUCUGAUAGUCGAACACUCGACACUUUC-----------AUGGCUUAUAGGUAUUUGUUAGUCUAAAACUCGGUUCA
..................(((((-((......(((((((..(((((((...(((((....))))).(....-----------..).....)))))))..)))))))......))))))). ( -29.20, z-score =  -2.23, R)
>droSim1.chrX 15324135 107 + 17042790
------------UGAAUGGGUUUUGAUUGGAUGCCUAAUGGGUAUGUGAUAGUCGAACACUCGACUCUUUUUAAUGGUUUAAAUGACUUUAAAGUAUCUGUUAGUC-AAAGCUCGAUUCA
------------.((((((((((((((((((((((.....)))))..(((((((((....)))))...((((((.((((.....))))))))))))))..))))))-))))))).)))). ( -31.60, z-score =  -3.60, R)
>droSec1.super_8 2155218 120 + 3762037
UCUUGGAUUGAUUGAAUGGGUUUUGAUUGGAUGCCUAAUGGGUAUGUGAUAGUCGAACACUCGACUCUUUUUAAUGGUUUAAAGGACUUUAAAGUAUCUGUUAGUCGAAAACUCGAUUCA
............(((((((((((((((((((((((.....)))))..(((((((((....)))))...((((((.((((.....))))))))))))))..)))))).))))))).))))) ( -27.70, z-score =  -0.99, R)
>consensus
UC_U_GAUUGAUUGAAUGGGUUUUGAUUGGAUGCCUAAUGGGUAUGUGAUAGUCGAACACUCGACUCUUUUUAAUGGUUUAAAUGACUUUAAAGUAUCUGUUAGUC_AAAACUCGAUUCA
............(((((((((((((((((((((((.....)))))..(((.(((((....)))))....................(((....))))))..)))))).))))))).))))) (-17.72 = -18.07 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:42 2011