| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,915,601 – 19,915,713 |
| Length | 112 |
| Max. P | 0.762859 |
| Location | 19,915,601 – 19,915,713 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.52 |
| Shannon entropy | 0.13160 |
| G+C content | 0.39955 |
| Mean single sequence MFE | -33.88 |
| Consensus MFE | -27.51 |
| Energy contribution | -27.57 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.762859 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19915601 112 + 22422827 AACUGCAUUCUUGGCUUUUGUGUUGCUAACGUGUGUGGUUUUU--------GGUAGAACACGUUUCCGAGAGAAUCACACGUGUCGCAUGUUUAUGCAAUUUGAAUAAAAACUGUGGUUU (((..((....((((.........))))(((((((...(((((--------((.(((.....))))))))))...)))))))...((((....))))...............))..))). ( -26.70, z-score = -0.11, R) >droSec1.super_8 2145900 112 + 3762037 AACUGCAUUCUUGGCUUUUGUGUUGCCAACGUGUGUGGUUUUU--------GGGAGAACACGUUUCCGAGAGAAUCACACGUGUCGCAUGUUUAUGCAAUUUGAAUAAAAACUGCGGUUU (((((((....((((.........))))(((((((((((((((--------.(((((.....)))))..))))))))))))))).((((....))))...............))))))). ( -34.90, z-score = -2.03, R) >droYak2.chrX 10275691 120 - 21770863 AACUGCAUUCUUGGCUUUUAUGCUGCCAACGUGUGUGGUUUUUUUUUUUUGGAGAGAACACGUUUCCAAGAGAAUCACACAUGUCGCAUGUUUAUGCCAUUUGAAUAAAAACUGUGGUUU (((..(((((.((((...((.(((((..(((((((((((((((.....(((((((.......)))))))))))))))))))))).))).)).)).))))...))).......))..))). ( -37.21, z-score = -3.31, R) >droEre2.scaffold_4690 10065112 112 + 18748788 AACUGCAUUCUUGGCUUUUGUGUUGCCAACGUGUGUGGUUUUG--------GGGAGAACACGUUUCCGAGAGAAUCACACAUGUCGCAUGUUUAUGCAAUUUGAAUAAAAAUUGCGGUUU ((((((.....((((.........))))((((((((((((((.--------.(((((.....)))))...)))))))))))))).))).)))..((((((((......)))))))).... ( -36.70, z-score = -2.72, R) >consensus AACUGCAUUCUUGGCUUUUGUGUUGCCAACGUGUGUGGUUUUU________GGGAGAACACGUUUCCGAGAGAAUCACACAUGUCGCAUGUUUAUGCAAUUUGAAUAAAAACUGCGGUUU (((((((....((((.........))))(((((((((((((((........(((((......)))))..))))))))))))))).((((....))))...............))))))). (-27.51 = -27.57 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:41 2011