| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,909,410 – 19,909,506 |
| Length | 96 |
| Max. P | 0.506575 |
| Location | 19,909,410 – 19,909,506 |
|---|---|
| Length | 96 |
| Sequences | 10 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 67.30 |
| Shannon entropy | 0.62406 |
| G+C content | 0.51683 |
| Mean single sequence MFE | -28.73 |
| Consensus MFE | -14.59 |
| Energy contribution | -15.12 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.63 |
| Mean z-score | -0.63 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.506575 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19909410 96 + 22422827 -------------------UUUUCUGAGUGCUUUUGGAUGUGCGAGGCGGCGAGGGUAAUGAAGCGGAAGCGGAAACGAAUUACUUUG--UAGCAGUCGCAGCAGCCUUGACCUUGC -------------------...((..((....))..))...((((((...((((((((((...((....))(....)..))))).(((--(.((....)).))))))))).)))))) ( -30.10, z-score = -0.41, R) >droWil1.scaffold_180777 3976010 83 - 4753960 --------------------------------CUUUCUAGCGCAAGGUGGCGAACUUAAUGAAGCGGAUGCGGAACCGCAUCACUUUG--GAGCAAUUGCCAGAGCCUUGACCUCAC --------------------------------..........(((((((((((.(((...((((..((((((....)))))).)))).--)))...)))))...))))))....... ( -26.30, z-score = -1.50, R) >droPer1.super_13 1240290 114 + 2293547 AGUGCGAGUGGGGUUGGGGUCCUCUGAGUGCUUUCCGA-GUGCGAGGCGGUGGAAGUAAUGAAGCGGAAGCGGAAACGAAUUACUUUG--UAGCAGUUGCUAGAGCCUUGACCUUGC .......(..((((..((((((.((..(..(((...))-)..)..)).))..((((((((...((....))(....)..)))))))).--((((....))))..))))..))))..) ( -42.10, z-score = -2.07, R) >droAna3.scaffold_13417 5078210 95 - 6960332 -------------------UUCUCUGAGUGCUUUUCGA-GUGCGAGGCAGCGGAAGUAAUGAAGCGGAAGCGGAAACGAAUUACUUUG--UAGCAGUUGCUUGGGCCUUGACCUUGC -------------------................(((-(..((((((....((((((((...((....))(....)..)))))))).--.(((....)))...))))))..)))). ( -28.50, z-score = -0.12, R) >droEre2.scaffold_4690 10059600 96 + 18748788 -------------------UUUUCUGAGUGCUGUUGGGCGUGCGAGGCGGCGAGGGUAAUGAAGCGGAAGCGGAAACGAAUUACUUUG--UAGCAGUCGCAGCAGCCUUGACCUUGC -------------------......(((.((((((((((.(((......((((((.((((...((....))(....)..)))))))))--).)))))).))))))))))........ ( -32.40, z-score = -0.37, R) >droYak2.chrX 10270011 96 - 21770863 -------------------UUUUCUGAGUGCUUUUGGGUGUGCGAGGCGGCGAGGGUAAUGAAGCGGAAGCGGAAACGAAUUACUUUG--UAGCAGUCGCAGCAGCCUUGACCUUGC -------------------......(((.(.((..((.(((((((.((.((((((.((((...((....))(....)..)))))))))--).))..))))).)).))..)))))).. ( -30.70, z-score = -0.28, R) >droSec1.super_8 2139846 96 + 3762037 -------------------UUUUCUGAGUGCUUUUGGAUGUGCGAGGCGGCGAGGGUAAUGAAGCGGAAGCGGAAGCGAAUUACUUUG--UAGCAGUCGCAGCAGCCUUGACCUUGC -------------------...((..((....))..)).((.((((((.((((..((.(..(((..(..((....))...)..)))..--).))..))))....))))))))..... ( -30.50, z-score = -0.12, R) >droSim1.chrX 15314368 96 + 17042790 -------------------UUUUCUGAGUGCUUUUGGAUGUGCGAGGCGGCGAGGGUAAUGAAGCGGAAGCGGAAACGAAUUACUUUG--UAGCAGUCGCAGCAGCCUUGACCUUGC -------------------...((..((....))..))...((((((...((((((((((...((....))(....)..))))).(((--(.((....)).))))))))).)))))) ( -30.10, z-score = -0.41, R) >droGri2.scaffold_14853 2879841 72 + 10151454 -------------------------------------------CUGUCGGCUGGAGUAAUGAAGCGGAAGCGGAAACGAAUUGCUUAG--CAUCACUCGAUGGCGCCUUGACCUUGU -------------------------------------------..((((((..(((((((...((....))(....)..)))))))..--((((....))))..)))..)))..... ( -21.30, z-score = -0.79, R) >droVir3.scaffold_12970 1920285 79 - 11907090 -------------------------------------UAAUGUUGUGCUGAGUGGACUAUUUAG-AAAUCCAAAAAACAGUUACUGCAGCUGUUUUUCGCUCAUUUUCCGACCGUGG -------------------------------------....((((...((((((..((....))-.......((((((((((.....)))))))))))))))).....))))..... ( -15.30, z-score = -0.27, R) >consensus ___________________UUUUCUGAGUGCUUUUGGAUGUGCGAGGCGGCGAGGGUAAUGAAGCGGAAGCGGAAACGAAUUACUUUG__UAGCAGUCGCAGCAGCCUUGACCUUGC ..........................................((((((....((((((((...((....))(....)..)))))))).....((....))....))))))....... (-14.59 = -15.12 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:39 2011