| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,900,543 – 19,900,641 |
| Length | 98 |
| Max. P | 0.745144 |
| Location | 19,900,543 – 19,900,641 |
|---|---|
| Length | 98 |
| Sequences | 7 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 66.65 |
| Shannon entropy | 0.62825 |
| G+C content | 0.47343 |
| Mean single sequence MFE | -20.51 |
| Consensus MFE | -9.11 |
| Energy contribution | -9.49 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.745144 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19900543 98 - 22422827 CGAUUCGCUUUACCAGAAUAGAGUAGUGUCCUUCAAAGUGGGCUGCUCCCACAACCUAUCACAUAUCACGAGCAGCAAGCUUU----UCCUCCCACCCAAAA--------- ......((((((......)))))).(((......(((((..(((((((.....................)))))))..)))))----......)))......--------- ( -20.40, z-score = -1.81, R) >droAna3.scaffold_13417 5069141 110 + 6960332 CGGUUCGCUUCAAUCAGA-GACGUAGUGCUAGUUUUUGUUGGCUGCUCUCGAAAUUCCGAACAUAUCACGAGCAGCUGGCAAAAAUGUAUUCCCAACCCCACCCCCAGCCG (((((((..((.....))-..)).(((((..((((((((..((((((((((......))).........)))))))..)))))))))))))...............))))) ( -31.30, z-score = -2.76, R) >droSec1.super_8 2131132 101 - 3762037 CGAUUCGCUUUACCAGGAUAGAGUAGUGUCCUUCAAAGUGGGCUGCUCCCACAACCUAUCACAUAUCACGAGCAGCAAGCUUU-UCCUCCUCCCACCCAAAA--------- ....(((((((...((((((......))))))..)))))))(((((((.....................))))))).......-..................--------- ( -21.90, z-score = -1.54, R) >droYak2.chrX 10260861 102 + 21770863 CGAUUCGCUUUACCAGCAUAGAGUAGUGUCCUUCAGAGUGGGCUGCUCCCACAACCUAUCACAUAUCACGAGCAGCAAGCUAU----UCCUCCCACCCAAAACCAA----- ......(((.....)))...(((((((..((........))(((((((.....................)))))))..)))))----)).................----- ( -21.10, z-score = -1.57, R) >droEre2.scaffold_4690 10051459 102 - 18748788 CGAUUCGCUUCACCAGGAUGGAGUAGGGUCCUCCAGAGUAGGCUGCUCCCACAACCUAUCACAUAUCACGAGCCGCAAGCUAU----UCCUCCCACCCAAAGUCCA----- .((((.((((((......)))))).((((......((((((((.((((.....................)))).))...))))----)).....))))..))))..----- ( -21.50, z-score = 0.24, R) >droPer1.super_13 1231851 96 - 2293547 CAAUUCGCUUUAAAUUGA--GGAUAAUGUU-----UUGUAUGCUAAUUCC-UGACCUAUCACAUAUCACGAGCAGACAACUAC-UCGUAUUCCCAUCACCGAAUG------ ..(((((..........(--(((....((.-----......))....)))-)...............(((((.((....)).)-))))...........))))).------ ( -13.70, z-score = -0.42, R) >dp4.chrXL_group1e 5205550 96 + 12523060 CAAUUCGCUUUAAAUUGA--GGAUAAUGUU-----UUGUAUGCUAAUUCC-UGACCUAUCACAUAUCACGAGCAGACAACUAC-UCGUAUUCCCCUCACCGAAUG------ ..(((((..........(--(((....((.-----......))....)))-)...............(((((.((....)).)-))))...........))))).------ ( -13.70, z-score = -0.60, R) >consensus CGAUUCGCUUUACCAGGAUAGAGUAGUGUCCUUCAUAGUAGGCUGCUCCCACAACCUAUCACAUAUCACGAGCAGCAAGCUAU____UCCUCCCACCCAAAA_C_______ .(((..(((((........)))))...)))....(((((..(((((((.....................)))))))..)))))............................ ( -9.11 = -9.49 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:38 2011