| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,900,239 – 19,900,310 |
| Length | 71 |
| Max. P | 0.632434 |
| Location | 19,900,239 – 19,900,310 |
|---|---|
| Length | 71 |
| Sequences | 5 |
| Columns | 71 |
| Reading direction | reverse |
| Mean pairwise identity | 72.29 |
| Shannon entropy | 0.48757 |
| G+C content | 0.59215 |
| Mean single sequence MFE | -22.32 |
| Consensus MFE | -8.88 |
| Energy contribution | -11.48 |
| Covariance contribution | 2.60 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.632434 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chrX 19900239 71 - 22422827 CUGACCGCCCAUCCACAUGGAUGGAGCAUCCCCAUUGAUGGGCCAUGGACACAAAACCACAACCAUCGGCG ..(.((((((((((....)))))).)).........(((((....(((........)))...)))))))). ( -24.50, z-score = -2.53, R) >droSim1.chrU 9154619 71 + 15797150 CUGGCCACCCAUCCACACGGAUGGCGCAUCCCCAUUGAUGGGCCAUGGACGAAACACUCCAUCUAUCGGCG .(((((..((((((....))))))..((((......)))))))))((((........)))).......... ( -23.50, z-score = -1.59, R) >droSec1.super_8 2130815 69 - 3762037 CUGACCGCCCAUCCACACGGAUGGAGCAUCCCCAUUGAUGGGCCAUGG--ACGUAACCACAACCAUCGGCG ..(.((((((((((....)))))).)).........(((((....(((--......)))...)))))))). ( -24.40, z-score = -2.18, R) >droYak2.chrX 10260484 58 + 21770863 CCGACCGACCAUCCACAU----GGAGCAUCCCGAUCGAUGG---------AUGAAACUAUAGCCAUCGGCG .((.((((((((....))----))..(((((........))---------)))............)))))) ( -14.10, z-score = -0.81, R) >droEre2.scaffold_4690 10051152 65 - 18748788 CUGACCGUCCGUCCACAU----GGAGCAUCCCGAUUGAUGCACCCUGG--AUGGAGUCGCUACCUUCGGCU ..(((..((((((((...----((.(((((......))))).)).)))--))))))))(((......))). ( -25.10, z-score = -2.59, R) >consensus CUGACCGCCCAUCCACAUGGAUGGAGCAUCCCCAUUGAUGGGCCAUGG__ACGAAACCACAACCAUCGGCG ..(.((((((((((....)))))).)).........(((((....(((........)))...)))))))). ( -8.88 = -11.48 + 2.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:38 2011