| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,895,112 – 19,895,221 |
| Length | 109 |
| Max. P | 0.531928 |
| Location | 19,895,112 – 19,895,221 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 57.99 |
| Shannon entropy | 0.74099 |
| G+C content | 0.53138 |
| Mean single sequence MFE | -29.76 |
| Consensus MFE | -7.74 |
| Energy contribution | -8.34 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.26 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.531928 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19895112 109 - 22422827 CAUCGAUCUAUCGACGUCGCUGGAAAUCACCACGCACACUCGCCAGAGCGGGUUGCAGGGAGGUUUCCGGGGGCCGGAGAUUCUAAC---ACUAGAGCACGGAUCAUUUCUA ....((((((((..((((.(((((((((.((..(((.((((((....)))))))))..)).))))))))).)).))..)))((((..---..))))....)))))....... ( -42.20, z-score = -3.42, R) >droWil1.scaffold_180777 3951465 106 + 4753960 AAUCACAACAUUUG-GACGCUAUGGAGCUCCACGUCCGAUCACCAGUAUGGGCGAAAUCAUGCGUUCGGGCAAUCAAGGAUAAAAGUCUCGCAAUACAAUCGAAACA----- .(((........((-((.(((....))))))).((((((......((((((......))))))..)))))).......)))....((.(((.........))).)).----- ( -23.80, z-score = -0.42, R) >droSim1.chrX 15281008 88 - 17042790 CAUCGCUCUAUCGACGUCGCUGGAAUU---CACUCACAUUCGCCAGUA-----UGCAAUGAGGUCUCCGGCGGCAGAAGAUUCUAAC---ACUAGAGCA------------- ....((((((.....(((((((((...---(.(((((((.(....).)-----))...)))))..)))))))))(((....)))...---..)))))).------------- ( -28.40, z-score = -2.42, R) >droSec1.super_8 2125921 91 - 3762037 CAUCGCUCUAUCGACGUCGCUGGAAUUCACCACUCACACUCGCCAGUA-----UGCAAUGAUGUCUCCGGCGGCAGAAGAUUCUAAC---ACUAGAGCA------------- ....((((((.....(((((((((...((.((..((.(((....))).-----))...)).))..)))))))))(((....)))...---..)))))).------------- ( -26.60, z-score = -1.95, R) >droYak2.chrX 10255148 112 + 21770863 CUUCGCUGCACGGACGCCGCUGGAAUGAACCACGCACACACGCCAGCACGACCUGCAUCCAGGGCUCCAGGGGCAGGAGAUUCGAACACAACUAGACCACCGAUCAUCACUG ..((.((((.((((.(((.(((((.........((......))..(((.....))).))))))))))).)..))))))(((.((................)))))....... ( -27.79, z-score = 0.10, R) >consensus CAUCGCUCUAUCGACGUCGCUGGAAUUCACCACGCACACUCGCCAGUA_G___UGCAACGAGGUCUCCGGCGGCAGAAGAUUCUAAC___ACUAGAGCA__GA_________ ...............(((((((((.........................................)))))))))...................................... ( -7.74 = -8.34 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:37 2011