| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,889,159 – 19,889,213 |
| Length | 54 |
| Max. P | 0.705837 |
| Location | 19,889,159 – 19,889,213 |
|---|---|
| Length | 54 |
| Sequences | 5 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 91.91 |
| Shannon entropy | 0.14032 |
| G+C content | 0.50189 |
| Mean single sequence MFE | -17.26 |
| Consensus MFE | -14.40 |
| Energy contribution | -14.36 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.705837 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19889159 54 + 22422827 -UCGAGGGGAUAGCAAUAGUUUCGGUGUUGAUCCUGGACUUGGCAAAGGUCCAGC -.....(((((((((..........)))).)))))((((((.....))))))... ( -14.10, z-score = -0.64, R) >droEre2.scaffold_4690 10040729 54 + 18748788 -UCCAGAGGAUAGUAAUACUUUCGGUGUGGAUCCUGGACUUGGCAAAGGUCCAGC -.....(((((....((((.....))))..)))))((((((.....))))))... ( -16.20, z-score = -1.24, R) >droYak2.chrX 10236017 55 - 21770863 UUUGAGGGGAUAGUAAUACUUUCGGUGUUGAUCCCGGACUUGGCAAAGGUCCAGC ......(((((..((((((.....)))))))))))((((((.....))))))... ( -19.10, z-score = -2.48, R) >droSec1.super_8 2120103 54 + 3762037 -UCGAGGGAAUAGCAAUACUUUCGGUGUUGAUCCUGGACUUGGCAAAGGUCCAGC -....((((....((((((.....)))))).))))((((((.....))))))... ( -17.30, z-score = -1.95, R) >droSim1.chrX 15305082 54 + 17042790 -UCGAGGGAUUAGCAAUACUUUCGGUGUUGAUCCUGGACUUGGCAAAGGUCCAGC -....((((((((((...(....).))))))))))((((((.....))))))... ( -19.60, z-score = -2.79, R) >consensus _UCGAGGGGAUAGCAAUACUUUCGGUGUUGAUCCUGGACUUGGCAAAGGUCCAGC .....((((....((((((.....)))))).))))((((((.....))))))... (-14.40 = -14.36 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:33 2011