| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,888,329 – 19,888,394 |
| Length | 65 |
| Max. P | 0.998742 |
| Location | 19,888,329 – 19,888,394 |
|---|---|
| Length | 65 |
| Sequences | 5 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 90.89 |
| Shannon entropy | 0.16052 |
| G+C content | 0.58200 |
| Mean single sequence MFE | -29.18 |
| Consensus MFE | -28.20 |
| Energy contribution | -29.24 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.05 |
| Mean z-score | -3.66 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.47 |
| SVM RNA-class probability | 0.998742 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19888329 65 + 22422827 CUGUCAGCUGGCAGUUUUCCUUUACCAGCUGGCAGUGCCUGGCUGACGUGAAUUCCCGAAAAGUC (((((((((((.((.......)).))))))))))).....((((..((.(....).))...)))) ( -21.20, z-score = -1.54, R) >droEre2.scaffold_4690 10039438 61 + 18748788 CUGUCAUCUGGCAGUUUCCCCC-ACCAGCUGGCAG---CCGGCUGACGGGAGUUCCCGAAAAGUC (((((....)))))........-..(((((((...---))))))).((((....))))....... ( -22.20, z-score = -1.38, R) >droYak2.chrX 10235182 63 - 21770863 CUGUCAGCUGGCUGUUUUCCUUUGCCAGCUGGCAG--CCCGGCUGACGGGAAUUCCCGAAAAGUC ((((((((((((...........))))))))))))--...((((..((((....))))...)))) ( -32.50, z-score = -4.56, R) >droSec1.super_8 2119159 62 + 3762037 CUGUCAGCUGGCAGUUUUCCUUUGCCAGCUGGCAG--CC-GGCUGACGGGAAUUCCCGAAAAGUC ((((((((((((((.......))))))))))))))--..-((((..((((....))))...)))) ( -35.00, z-score = -5.42, R) >droSim1.chrX 15304142 62 + 17042790 CUGUCAGCUGGCAGUUUUCCUUUGCCAGCUGGCAG--CC-GGCUGACGGGAAUUCCCGAAAAGUC ((((((((((((((.......))))))))))))))--..-((((..((((....))))...)))) ( -35.00, z-score = -5.42, R) >consensus CUGUCAGCUGGCAGUUUUCCUUUGCCAGCUGGCAG__CC_GGCUGACGGGAAUUCCCGAAAAGUC ((((((((((((((.......)))))))))))))).....((((..((((....))))...)))) (-28.20 = -29.24 + 1.04)
| Location | 19,888,329 – 19,888,394 |
|---|---|
| Length | 65 |
| Sequences | 5 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 90.89 |
| Shannon entropy | 0.16052 |
| G+C content | 0.58200 |
| Mean single sequence MFE | -24.46 |
| Consensus MFE | -20.56 |
| Energy contribution | -20.80 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.908873 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19888329 65 - 22422827 GACUUUUCGGGAAUUCACGUCAGCCAGGCACUGCCAGCUGGUAAAGGAAAACUGCCAGCUGACAG ..................(((.....))).(((.(((((((((.........))))))))).))) ( -18.90, z-score = -0.84, R) >droEre2.scaffold_4690 10039438 61 - 18748788 GACUUUUCGGGAACUCCCGUCAGCCGG---CUGCCAGCUGGU-GGGGGAAACUGCCAGAUGACAG ........(((....)))(((((((((---(.....))))))-((((....)).))...)))).. ( -23.70, z-score = -1.23, R) >droYak2.chrX 10235182 63 + 21770863 GACUUUUCGGGAAUUCCCGUCAGCCGGG--CUGCCAGCUGGCAAAGGAAAACAGCCAGCUGACAG ........(((....)))((((((..((--(((((....)))...(.....))))).)))))).. ( -25.70, z-score = -2.39, R) >droSec1.super_8 2119159 62 - 3762037 GACUUUUCGGGAAUUCCCGUCAGCC-GG--CUGCCAGCUGGCAAAGGAAAACUGCCAGCUGACAG ........(((....)))((((((.-((--(((((....)))).((.....))))).)))))).. ( -27.00, z-score = -3.09, R) >droSim1.chrX 15304142 62 - 17042790 GACUUUUCGGGAAUUCCCGUCAGCC-GG--CUGCCAGCUGGCAAAGGAAAACUGCCAGCUGACAG ........(((....)))((((((.-((--(((((....)))).((.....))))).)))))).. ( -27.00, z-score = -3.09, R) >consensus GACUUUUCGGGAAUUCCCGUCAGCC_GG__CUGCCAGCUGGCAAAGGAAAACUGCCAGCUGACAG .......((((....))))...........(((.((((((((..((.....)))))))))).))) (-20.56 = -20.80 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:33 2011