| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,082,594 – 12,082,706 |
| Length | 112 |
| Max. P | 0.959379 |
| Location | 12,082,594 – 12,082,706 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 81.06 |
| Shannon entropy | 0.30902 |
| G+C content | 0.48183 |
| Mean single sequence MFE | -30.77 |
| Consensus MFE | -22.92 |
| Energy contribution | -23.32 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.67 |
| SVM RNA-class probability | 0.959379 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12082594 112 + 23011544 CGAACGAGGGCAAUUACUCCAUUUACUUCGUAGUCCCAUAGGGACCAACACUCUCUAUUCGAUGGAAUCGAGGGGGCAAUUAACACCUUGGUUGGAGUUGUCUUCGCUAUUU ....((((((((...((((((...........(((((.((((((.......))))))((((((...))))))))))).......((....))))))))))))))))...... ( -34.50, z-score = -2.22, R) >droSim1.chr2L 11879798 100 + 22036055 CGAACGAGGGCAAUUACUCCAUUUACUGCG------------GACCAACACUCUCUAUUCGAUGGAAUCGAGGGGGCAAUUAACACCUUGGUUGGAGUUGUCUUCGCUAUUU ....(((((((((((..(((.........)------------))(((((.(((((.((((....)))).)))))((.........))...))))))))))))))))...... ( -29.90, z-score = -2.49, R) >droSec1.super_16 270823 111 + 1878335 CGAACGAGGGCAAUUACUCCAUUUACUGCGUAGUCCC-UAUGGACCAACACUCUCUAUUCGAUGGAAUCGAGGGGGCAAUUAACACCUUGGUUGGAGUUGUCUUCGCUAUUU ....((((((((...((((((.....(((((.((((.-...))))..)).(((((.((((....)))).))))).)))......((....))))))))))))))))...... ( -34.10, z-score = -2.17, R) >droEre2.scaffold_4929 13303852 91 - 26641161 CGAACGAGGGCAAUUACUCC-------ACA------------GAGCAACACUCU--GUUCGAUGGAAUCAAGGGGGCAAUUAACACCUCGGUUGGAGUUGUCUUCGCUAGUU ....((((((((...(((((-------(((------------(((.....))))--)).......((((.(((.(........).))).)))))))))))))))))...... ( -28.80, z-score = -2.27, R) >droYak2.chr2L 8498783 84 + 22324452 GAAACGAGGGCAAUUACUCC-------GCA------------GGGCAACACUCC--AUUCGAUGGAAUCGAGGGGGCAAUUAACACCUUGGUUGGAGUUGUCUUC------- .....(((((((...(((((-------(((------------(((.....((((--.((((((...)))))))))).........)))))..)))))))))))))------- ( -26.54, z-score = -1.93, R) >consensus CGAACGAGGGCAAUUACUCCAUUUACUGCG____________GACCAACACUCUCUAUUCGAUGGAAUCGAGGGGGCAAUUAACACCUUGGUUGGAGUUGUCUUCGCUAUUU ....((((((((...(((((............................((.((.......)))).((((((((.(........).)))))))))))))))))))))...... (-22.92 = -23.32 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:34:19 2011