Locus 15599

Sequence ID dm3.chrX
Location 19,871,729 – 19,871,849
Length 120
Max. P 0.915866
window21510

overview

Window 0

Location 19,871,729 – 19,871,849
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.31
Shannon entropy 0.18696
G+C content 0.45848
Mean single sequence MFE -33.41
Consensus MFE -27.76
Energy contribution -30.00
Covariance contribution 2.24
Combinations/Pair 1.09
Mean z-score -2.11
Structure conservation index 0.83
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.25
SVM RNA-class probability 0.915866
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19871729 120 - 22422827
AAACCUUGACACAAAUUAACGCAGAAUUGGCCGCCCCUUAAUCUCAUUUGCCGCCCAAUGAAAAUGCACUUCCUUCAGAAGUGUGUUGCUAGUGGCCAAUGGAGUUAAACUGCCCAAGGA
...(((((...((..(((((.(...(((((((((.........(((((........))))).((((((((((.....))))))))))....))))))))).).)))))..))..))))). ( -37.30, z-score =  -3.46, R)
>droSim1.chrX 15286557 118 - 17042790
AAACCUUGACACAAAUUAACGCAGAAUUGGCCGCCCCUUAAUCUCAUUUUCCGCCCAAUGGAAAUGCACUUCCUUCAGAAGUGUG--ACUAGUGGCCAAUGGAGUUGAACUGGCCAAGGA
...(((((.(.((..(((((.(...(((((((((.............((((((.....)))))).(((((((.....))))))).--....))))))))).).)))))..))).))))). ( -39.00, z-score =  -3.51, R)
>droSec1.super_8 2102877 118 - 3762037
AAACCUUGACACAAAUUAACGCAGAAUCGGCCGCCCCUUAAUCUCAUUUUCCGCCCAAUGGAAAUGCACUUCCUUCAGAAGUGUG--ACUAGUGGCCAAUGGAGUUGAACUGCCCAAGGA
...(((((...((..(((((.(...((.((((((.............((((((.....)))))).(((((((.....))))))).--....)))))).)).).)))))..))..))))). ( -33.50, z-score =  -2.33, R)
>droYak2.chrX 10220359 118 + 21770863
AAACCUUGACACAAAUUAACGCAGAAUUGGCCGCCCUUUAAUCUCAUUUUCCGCCCAAUGGAAAUGCAUUUCCUUCAGCAGUGCG--GCCAGUGGCCAAUGGAGUAAAAUUGCCCAAGGA
...(((((.................(((((((((.(...........((((((.....))))))(((..........)))).)))--))))))(((.(((........))))))))))). ( -31.90, z-score =  -1.02, R)
>droEre2.scaffold_4690 10025255 110 - 18748788
AAACCUUGACACAAAUUAACACAGAAUUGGCCGCCCUUUAAUCUUAUUUGCCGCCCCAUGGAAAUGCAUUUCCUUUAGAAGUGUG--GCUAGUGGAGAA--------AAUUGGCCAAGGA
...(((((.(...((((..(.(...(((((((((.((((.........(((..((....))....))).........)))).)))--)))))).).)..--------)))).).))))). ( -25.37, z-score =  -0.21, R)
>consensus
AAACCUUGACACAAAUUAACGCAGAAUUGGCCGCCCCUUAAUCUCAUUUUCCGCCCAAUGGAAAUGCACUUCCUUCAGAAGUGUG__GCUAGUGGCCAAUGGAGUUAAACUGCCCAAGGA
...(((((...((..(((((.(...(((((((((.............((((((.....)))))).(((((((.....))))))).......))))))))).).)))))..))..))))). (-27.76 = -30.00 +   2.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:30 2011