Locus 15598

Sequence ID dm3.chrX
Location 19,852,149 – 19,852,238
Length 89
Max. P 0.666361
window21509

overview

Window 9

Location 19,852,149 – 19,852,238
Length 89
Sequences 4
Columns 89
Reading direction forward
Mean pairwise identity 79.59
Shannon entropy 0.33050
G+C content 0.58708
Mean single sequence MFE -34.32
Consensus MFE -22.99
Energy contribution -21.80
Covariance contribution -1.19
Combinations/Pair 1.33
Mean z-score -1.65
Structure conservation index 0.67
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.38
SVM RNA-class probability 0.666361
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19852149 89 + 22422827
CUGUAGCUGUGCUCACCGCUUUUAGGAUCACCUCCUUGGAGGCAAAGCCACCCAUGGCGUCGAUGCACUGGAUCACCAGGUGGCUAAUA
...((((..(((((...((((((((((.....))).)))))))...((((....))))...)).)).((((....)))))..))))... ( -29.20, z-score =  -0.65, R)
>droSim1.chrU 2372047 89 - 15797150
UCGUGGCUGUGCCCACCGCUCUCAGGAUGACCGACUUGGGGGCAGAGCCACCCACGGCGUCUACGCACUGGAUCACCAGUUGGCAAAAG
..((((((.(((((.(((...((.((....))))..)))))))).))))))(((..(((....)))(((((....))))))))...... ( -37.60, z-score =  -2.00, R)
>droSec1.super_8 2067284 89 + 3762037
UCGUGGCUGUGCUCACCGCUCUCAGGAUGACCGACUUGGGGGCAGAGCCACCCACGGCGUCUACGCACUGGAUCACCAGUUGGCAAAAG
.(((((.((.((((...(((((((((........))))))))).)))))).)))))(((....)))(((((....)))))......... ( -36.90, z-score =  -2.00, R)
>droYak2.chrX 10200619 89 - 21770863
UGGCAGUGGUGCUCACCGCCUUCAGGAUCACCUUUUUGGGUGCGGAGCCACCCAUGACGAUUAUGGACUGGAGCACCAGAUGGCUUAUU
.(.((.((((((((.((((.(((((((......))))))).))))......((((((...))))))....))))))))..)).)..... ( -33.60, z-score =  -1.93, R)
>consensus
UCGUAGCUGUGCUCACCGCUCUCAGGAUCACCGACUUGGGGGCAGAGCCACCCACGGCGUCUACGCACUGGAUCACCAGUUGGCAAAAG
..(.(((...))))...(((((((((........)))))))))...((((......(((....))).((((....)))).))))..... (-22.99 = -21.80 +  -1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:29 2011