| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,847,415 – 19,847,495 |
| Length | 80 |
| Max. P | 0.677592 |
| Location | 19,847,415 – 19,847,495 |
|---|---|
| Length | 80 |
| Sequences | 4 |
| Columns | 80 |
| Reading direction | forward |
| Mean pairwise identity | 80.62 |
| Shannon entropy | 0.31379 |
| G+C content | 0.60938 |
| Mean single sequence MFE | -31.80 |
| Consensus MFE | -22.26 |
| Energy contribution | -22.70 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.677592 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19847415 80 + 22422827 CUGUAGCUGUGCUCACCGCUUUUAGGAUCACCUCCUUGGAGGCAAAGCCACCCAUGGCGUCGAUGCACUGGAUCACCAGG (((...((((((((...((((((((((.....))).)))))))...((((....))))...)).)))).)).....))). ( -23.60, z-score = -0.06, R) >droSim1.chrU 2372047 80 - 15797150 UCGUGGCUGUGCCCACCGCUCUCAGGAUGACCGACUUGGGGGCAGAGCCACCCACGGCGUCUACGCACUGGAUCACCAGU ..((((((.(((((.(((...((.((....))))..)))))))).)))))).....(((....)))(((((....))))) ( -35.80, z-score = -2.07, R) >droSec1.super_8 2067284 80 + 3762037 UCGUGGCUGUGCUCACCGCUCUCAGGAUGACCGACUUGGGGGCAGAGCCACCCACGGCGUCUACGCACUGGAUCACCAGU .(((((.((.((((...(((((((((........))))))))).)))))).)))))(((....)))(((((....))))) ( -36.80, z-score = -2.55, R) >droYak2.chrX 10200619 80 - 21770863 UGGCAGUGGUGCUCACCGCCUUCAGGAUCACCUUUUUGGGUGCGGAGCCACCCAUGACGAUUAUGGACUGGAGCACCAGA ......((((((((.((((.(((((((......))))))).))))......((((((...))))))....)))))))).. ( -31.00, z-score = -1.84, R) >consensus UCGUAGCUGUGCUCACCGCUCUCAGGAUCACCGACUUGGGGGCAGAGCCACCCACGGCGUCUACGCACUGGAUCACCAGU ((((((.((.((((...(((((((((........))))))))).)))))).))))))..........((((....)))). (-22.26 = -22.70 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:28 2011