| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,837,943 – 19,838,063 |
| Length | 120 |
| Max. P | 0.508081 |
| Location | 19,837,943 – 19,838,063 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.25 |
| Shannon entropy | 0.38513 |
| G+C content | 0.53750 |
| Mean single sequence MFE | -40.45 |
| Consensus MFE | -26.92 |
| Energy contribution | -25.80 |
| Covariance contribution | -1.12 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.508081 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19837943 120 + 22422827 GAACUUCUUGUCUGUAGCUGUGCUCACCGCUUUUAGGAUCACCUCCUUGGAGGCAAAGCCACCCAUGGCGUCGAUGCACUGGAUCACCAGGUGGCUAAUAUUCGCUUUUUUAUGCGACAU ........((((..((((..(((((...((((((((((.....))).)))))))...((((....))))...)).)).((((....)))))..))))......((........)))))). ( -34.90, z-score = -0.92, R) >droSim1.chrU 2372036 120 - 15797150 GAAUUUGAUUCUCGUGGCUGUGCCCACCGCUCUCAGGAUGACCGACUUGGGGGCAGAGCCACCCACGGCGUCUACGCACUGGAUCACCAGUUGGCAAAAGUCUGAUUUUCUAAGCGACAU (((((.((((...((((((.(((((.(((...((.((....))))..)))))))).))))))(((..(((....)))(((((....))))))))....)))).)))))............ ( -40.40, z-score = -1.10, R) >droSec1.super_8 2067273 120 + 3762037 GAAUUUGAUUUUCGUGGCUGUGCUCACCGCUCUCAGGAUGACCGACUUGGGGGCAGAGCCACCCACGGCGUCUACGCACUGGAUCACCAGUUGGCAAAAGUCUGAUUUUCUAAGCGACAU (((((.(((((((((((.((.((((...(((((((((........))))))))).)))))).)))))(((....)))(((((....))))).....)))))).)))))............ ( -41.10, z-score = -1.60, R) >droYak2.chrX 10200608 120 - 21770863 CACCUGGGUGCUGGCAGUGGUGCUCACCGCCUUCAGGAUCACCUUUUUGGGUGCGGAGCCACCCAUGACGAUUAUGGACUGGAGCACCAGAUGGCUUAUUUUCGUUUUGCCAGGCCGCAU ....(((((.(((((((((((((((.((((.(((((((......))))))).))))......((((((...))))))....))))))))(((((.......))))))))))))))).)). ( -45.40, z-score = -1.21, R) >consensus GAACUUGAUGCUCGUAGCUGUGCUCACCGCUCUCAGGAUCACCGACUUGGGGGCAGAGCCACCCACGGCGUCUACGCACUGGAUCACCAGUUGGCAAAAGUCCGAUUUUCUAAGCGACAU .............((.((..........(((((((((........)))))))))...((((......(((....))).((((....)))).))))..................)).)).. (-26.92 = -25.80 + -1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:27 2011