| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,832,792 – 19,832,912 |
| Length | 120 |
| Max. P | 0.773399 |
| Location | 19,832,792 – 19,832,912 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.64 |
| Shannon entropy | 0.36217 |
| G+C content | 0.51458 |
| Mean single sequence MFE | -40.80 |
| Consensus MFE | -26.95 |
| Energy contribution | -25.82 |
| Covariance contribution | -1.13 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.773399 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19832792 120 + 22422827 CUGUAGCUUUGCUCACCGCUUUUAGGAUCAUCUCCUUGGAGGCAAAGCCAUCCAUGGCGUCGAUGCACUGGAUCACCAGGUGGCUAAUAUUCGAUUUUUUUUGCGACAUUUGAAAAUCAA ...(((((.(((((...((((((((((.....))).)))))))...((((....))))...)).)))((((....))))..)))))......(((((((............))))))).. ( -31.80, z-score = -0.67, R) >droSim1.chrU 2372047 120 - 15797150 UCGUGGCUGUGCCCACCGCUCUCAGGAUGACCGACUUGGGGGCAGAGCCACCCACGGCGUCUACGCACUGGAUCACCAGUUGGCAAAAGUCUGAUUUUCUAAGCGACAUUUGAAAAUCAA ..((((((.(((((.(((...((.((....))))..)))))))).))))))(((..(((....)))(((((....))))))))........((((((((.((......)).)))))))). ( -44.20, z-score = -2.30, R) >droSec1.super_8 2067284 120 + 3762037 UCGUGGCUGUGCUCACCGCUCUCAGGAUGACCGACUUGGGGGCAGAGCCACCCACGGCGUCUACGCACUGGAUCACCAGUUGGCAAAAGUCUGAUUUUCUAAGCGACAUUUGAAAAUCAA .(((((.((.((((...(((((((((........))))))))).)))))).)))))(((....)))(((((....))))).(((....)))((((((((.((......)).)))))))). ( -44.60, z-score = -2.57, R) >droYak2.chrX 10200619 120 - 21770863 UGGCAGUGGUGCUCACCGCCUUCAGGAUCACCUUUUUGGGUGCGGAGCCACCCAUGACGAUUAUGGACUGGAGCACCAGAUGGCUUAUUUUCGUUUUGCCAGGCCGCAUUUGAAUGGCAA ((((((((((((((.((((.(((((((......))))))).))))......((((((...))))))....))))))))(((((.......))))))))))).((((........)))).. ( -42.60, z-score = -1.15, R) >consensus UCGUAGCUGUGCUCACCGCUCUCAGGAUCACCGACUUGGGGGCAGAGCCACCCACGGCGUCUACGCACUGGAUCACCAGUUGGCAAAAGUCCGAUUUUCUAAGCGACAUUUGAAAAUCAA ..((.((..........(((((((((........)))))))))...((((......(((....))).((((....)))).))))..................)).))............. (-26.95 = -25.82 + -1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:26 2011