Locus 15594

Sequence ID dm3.chrX
Location 19,826,406 – 19,826,513
Length 107
Max. P 0.823825
window21504 window21505

overview

Window 4

Location 19,826,406 – 19,826,513
Length 107
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 84.01
Shannon entropy 0.27987
G+C content 0.44041
Mean single sequence MFE -22.79
Consensus MFE -11.60
Energy contribution -12.72
Covariance contribution 1.12
Combinations/Pair 1.24
Mean z-score -2.41
Structure conservation index 0.51
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.19
SVM RNA-class probability 0.583604
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19826406 107 + 22422827
UCCUCGAUUUCCC-UGGCAGGUUCUUAUCAUCGUAGCAGCAAUACCACUGCUAUUACUAGUACUAUCUAGUGGCACUACCUUCGAUCCAUACCAAAUCAAGUUCACAC
.....(((((...-(((.((((..........(((((((........)))))))((((((......)))))).....)))).....)))....))))).......... ( -19.80, z-score =  -1.64, R)
>droSim1.chrX 15266052 108 + 17042790
UCCUCGAUUUCCCCUGGCAGGUUUUCAUCAUCGUAGCAGCAAAACCACUGCUAUUAUUGCUACUACCUAGUGGUACUACCUUCGAUCCAGACCAAAUCAAGUUCACAC
.....(((((...((((.((((..........(((((((........)))))))...(((((((....)))))))..)))).....))))...))))).......... ( -24.00, z-score =  -2.65, R)
>droSec1.super_2418 3990 108 + 4662
UCCUCGAUUUCCCCUGGCAGGUUUUCAUCAUCGUAGCAGCAAAACCACUGCUAUUAUUGCUACUACCUAGUGGUACUACCUUCGAUCCAGACCAAAUCGAGUUCACAC
..((((((((...((((.((((..........(((((((........)))))))...(((((((....)))))))..)))).....))))...))))))))....... ( -29.80, z-score =  -4.24, R)
>droYak2.chrX 10198328 104 - 21770863
-UCUCCAUUUUCCCUUAAAGAUUUUCAUCAUCGUAGCAGCACAACUACUGUUAUUGCUGGGAUUACCUAGU---GCUACCUUCGAUCCAGACCAAAUCAAGUUCGCAC
-..................(((((((...((((.((.(((..(((....)))...((((((....))))))---)))..)).))))...))..))))).......... ( -16.50, z-score =  -0.61, R)
>droEre2.scaffold_4690 10004363 104 + 18748788
UCCCCGAUUUCCC-UGGAAGGUUUUCAUCGUUGCAACAGCAAAACCAGUGUUAUUACUGGUUUUACCUACU---ACUAUCUUCGAUCCAGACCAAAUCAAGUUCACAC
.....(((((..(-((((((((.......((((...))))((((((((((....))))))))))))))...---...........)))))...))))).......... ( -23.83, z-score =  -2.90, R)
>consensus
UCCUCGAUUUCCCCUGGCAGGUUUUCAUCAUCGUAGCAGCAAAACCACUGCUAUUACUGGUACUACCUAGUGG_ACUACCUUCGAUCCAGACCAAAUCAAGUUCACAC
...................(((((..(((...(((((((........)))))))((((((......))))))...........)))..)))))............... (-11.60 = -12.72 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 5

Location 19,826,406 – 19,826,513
Length 107
Sequences 5
Columns 108
Reading direction reverse
Mean pairwise identity 84.01
Shannon entropy 0.27987
G+C content 0.44041
Mean single sequence MFE -31.39
Consensus MFE -20.58
Energy contribution -21.46
Covariance contribution 0.88
Combinations/Pair 1.24
Mean z-score -2.15
Structure conservation index 0.66
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.81
SVM RNA-class probability 0.823825
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19826406 107 - 22422827
GUGUGAACUUGAUUUGGUAUGGAUCGAAGGUAGUGCCACUAGAUAGUACUAGUAAUAGCAGUGGUAUUGCUGCUACGAUGAUAAGAACCUGCCA-GGGAAAUCGAGGA
.......((((((((((((.((((((..((((((((((((.(....((....))....)))))))))))))....))))........)))))))-....))))))).. ( -30.50, z-score =  -2.00, R)
>droSim1.chrX 15266052 108 - 17042790
GUGUGAACUUGAUUUGGUCUGGAUCGAAGGUAGUACCACUAGGUAGUAGCAAUAAUAGCAGUGGUUUUGCUGCUACGAUGAUGAAAACCUGCCAGGGGAAAUCGAGGA
.......((((((((..(((((((((..(.((.((((....)))).)).).....(((((((......)))))))))))..(....)....)))))..)))))))).. ( -33.70, z-score =  -2.40, R)
>droSec1.super_2418 3990 108 - 4662
GUGUGAACUCGAUUUGGUCUGGAUCGAAGGUAGUACCACUAGGUAGUAGCAAUAAUAGCAGUGGUUUUGCUGCUACGAUGAUGAAAACCUGCCAGGGGAAAUCGAGGA
.......((((((((..(((((((((..(.((.((((....)))).)).).....(((((((......)))))))))))..(....)....)))))..)))))))).. ( -35.80, z-score =  -2.86, R)
>droYak2.chrX 10198328 104 + 21770863
GUGCGAACUUGAUUUGGUCUGGAUCGAAGGUAGC---ACUAGGUAAUCCCAGCAAUAACAGUAGUUGUGCUGCUACGAUGAUGAAAAUCUUUAAGGGAAAAUGGAGA-
((((...((((((((.....))))).)))...))---)).......((((((((.((((....))))))))........(((....))).....)))).........- ( -25.40, z-score =  -0.90, R)
>droEre2.scaffold_4690 10004363 104 - 18748788
GUGUGAACUUGAUUUGGUCUGGAUCGAAGAUAGU---AGUAGGUAAAACCAGUAAUAACACUGGUUUUGCUGUUGCAACGAUGAAAACCUUCCA-GGGAAAUCGGGGA
.......((((((((..((((((.........((---.(((((((((((((((......))))))))))))..))).))...........))))-)).)))))))).. ( -31.55, z-score =  -2.56, R)
>consensus
GUGUGAACUUGAUUUGGUCUGGAUCGAAGGUAGU_CCACUAGGUAGUACCAGUAAUAGCAGUGGUUUUGCUGCUACGAUGAUGAAAACCUGCCAGGGGAAAUCGAGGA
.......((((((((..(((((((((..((((((((((((.(.((.((....)).)).)))))))...))))))....)))).........)))))..)))))))).. (-20.58 = -21.46 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:25 2011