| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,803,922 – 19,804,004 |
| Length | 82 |
| Max. P | 0.707728 |
| Location | 19,803,922 – 19,804,004 |
|---|---|
| Length | 82 |
| Sequences | 4 |
| Columns | 82 |
| Reading direction | forward |
| Mean pairwise identity | 79.67 |
| Shannon entropy | 0.32822 |
| G+C content | 0.57317 |
| Mean single sequence MFE | -28.53 |
| Consensus MFE | -22.19 |
| Energy contribution | -21.62 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.707728 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19803922 82 + 22422827 UUUGCUCACCGCUUUUAGGAUCAUCUCCUUGGAGGCAAAGCCAUCCAUGGCGUCGAUGCACUGGAUCACCAGGUGGCUAAUA ...((.((((.......(.(((..(.((.(((((((...))).)))).)).)..))).)..(((....)))))))))..... ( -26.00, z-score = -1.24, R) >droYak2.chrX 10200626 82 - 21770863 GGUGCUCACCGCCUUCAGGAUCACCUUUUUGGGUGCGGAGCCACCCAUGACGAUUAUGGACUGGAGCACCAGAUGGCUUAUU (((((((.((((.(((((((......))))))).))))......((((((...))))))....)))))))............ ( -30.10, z-score = -2.26, R) >droSec1.super_8 2067291 82 + 3762037 UGUGCUCACCGCUCUCAGGAUGACCGACUUGGGGGCAGAGCCACCCACGGCGUCUACGCACUGGAUCACCAGUUGGCAAAAG ((.((((...(((((((((........))))))))).)))))).(((..(((....)))(((((....))))))))...... ( -28.30, z-score = -0.76, R) >droSim1.chrU 2372054 82 - 15797150 UGUGCCCACCGCUCUCAGGAUGACCGACUUGGGGGCAGAGCCACCCACGGCGUCUACGCACUGGAUCACCAGUUGGCAAAAG ..((((....((.....(((((.(((...(((((((...))).))))))))))))..))(((((....))))).)))).... ( -29.70, z-score = -1.02, R) >consensus UGUGCUCACCGCUCUCAGGAUCACCGACUUGGGGGCAGAGCCACCCACGGCGUCUACGCACUGGAUCACCAGUUGGCAAAAG ..........(((((((((........)))))))))...((((......(((....))).((((....)))).))))..... (-22.19 = -21.62 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:22 2011