| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,799,942 – 19,800,054 |
| Length | 112 |
| Max. P | 0.639122 |
| Location | 19,799,942 – 19,800,054 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 93.16 |
| Shannon entropy | 0.11647 |
| G+C content | 0.34363 |
| Mean single sequence MFE | -24.90 |
| Consensus MFE | -21.14 |
| Energy contribution | -21.06 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.639122 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19799942 112 + 22422827 AAAGUGUUCGGAUAGUCGUUGAAAUAGUUUUUUUAUUUUGGUAUAACCGAUUUUUAAAUCGCCAAAUCGAGUCUACCGACUUUAAAUUGUAAUGAUUAUCGUGCAUGCCUAA ...((((...((((((((((...(((((((....(..((((((.(..((((((..........))))))..).))))))..).)))))))))))))))))..))))...... ( -22.90, z-score = -1.45, R) >droEre2.scaffold_4690 10002191 110 + 18748788 GACGUGUUCGGAUAGUCGUUGACAUAGUUUUUUU--UUUGGUAUAACCGAUGUUUGAAUCACCAAAUCGAGUCUACCGACUUUAAAUUGUAAUGAUUAUCGUACAUGCCUGA ..(((((...((((((((((...(((((((....--.((((((.(..((((..(((......)))))))..).))))))....)))))))))))))))))..)))))..... ( -25.40, z-score = -1.29, R) >droYak2.chrX 10196100 111 - 21770863 GACGUGUUCGGAUAGUCGUUGAAAUAGUUUUUUU-UUUUGGUACAACCGAUUUUUGAAUCGCCAAAUCAAGUCUACCGACUAUAAAUUGUAAUGAUUAUCGUGCAUGUCUGC (((((((...(((((((((((..((((((.....-.((((((.....(((((....)))))....))))))......))))))......)))))))))))..)))))))... ( -29.40, z-score = -2.80, R) >droSec1.super_8 2062812 110 + 3762037 AAAGUGUUCGGAUAGUCGUUGAAAUAGUUUUUUU--UUUGGUAUAACCGAUUUUUAAAUCGCCAAAUCAAGUCUACCGACUUUAAAUUGUAAUGAUUAUCGCGCAUGCCUGA ...((((.(((((((((((((.(((.........--(((((......(((((....))))))))))..(((((....)))))...))).))))))))))).)).)))).... ( -23.40, z-score = -1.52, R) >droSim1.chrX 15263821 110 + 17042790 AAAGUGUUCGGAUAGUCGUUGAAAUAGUUUUUUU--UUUGGUAUAACCGAUUUUUAAAUCGCCAAAUCAAGUCUACCGACUUUAAAUUGUAAUGAUUAUCGCGCAUGCCUGA ...((((.(((((((((((((.(((.........--(((((......(((((....))))))))))..(((((....)))))...))).))))))))))).)).)))).... ( -23.40, z-score = -1.52, R) >consensus AAAGUGUUCGGAUAGUCGUUGAAAUAGUUUUUUU__UUUGGUAUAACCGAUUUUUAAAUCGCCAAAUCAAGUCUACCGACUUUAAAUUGUAAUGAUUAUCGUGCAUGCCUGA ...((((.((.(((((((((...(((((((......((((((......((((....))))))))))..(((((....))))).)))))))))))))))))).))))...... (-21.14 = -21.06 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:21 2011