| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,079,548 – 12,079,650 |
| Length | 102 |
| Max. P | 0.767375 |
| Location | 12,079,548 – 12,079,650 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 62.47 |
| Shannon entropy | 0.67884 |
| G+C content | 0.36383 |
| Mean single sequence MFE | -21.45 |
| Consensus MFE | -8.12 |
| Energy contribution | -7.82 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.60 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.767375 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12079548 102 - 23011544 ----GGCUAAUAAGGUGUGGCAAAGGU-AACUGCCUUUGUUAACAUUCGGUAACCUUGAAUAUUAUUGUAUGUUUGGAAAGUAAUCUCAGAGUAGAGUAAUAUAUAA ----......((((((.((((((((((-....))))))))))..........)))))).((((((((.(((.((((((......)).))))))).)))))))).... ( -24.90, z-score = -2.04, R) >droAna3.scaffold_12943 2484381 96 + 5039921 GCAUUAUGGCCAAAAGGUGGCGAAAUCGGAUCUACUUUGUUGGCAGU---UAACAGCGAAUGGCA---AUGGGAAGUAAAUUGAAUUUAAGUUGGCAGAAUA----- ((......((((((((((((((....))...))))))).)))))...---...((((......((---((.........)))).......))))))......----- ( -20.32, z-score = -0.24, R) >droYak2.chr2L 8495623 86 - 22324452 ---------------GGUCAAUAAGGU-AACUGCCUUUGUGGGCAUUCCGUAACCUUGAAUAU-----UUUGUAAGGAAAGUAAUCUUAAGGACGGGUAAUAUCUUA ---------------......((((((-(..(((((....))))).(((((..((((((.(((-----(((......))))))...)))))))))))...))))))) ( -21.90, z-score = -1.68, R) >droEre2.scaffold_4929 13300776 89 + 26641161 ----GGUUAUUAAGGUGCGGCAAAGGU-AACUGCCUUUGUUGGCAUUCGGUAACCUUGAAUAU-----UUUGUGUGGAAAGUAAUUUCAAAAUAGAGUA-------- ----((((((..((.((((((((((((-....))))))))).)))))..)))))).....(((-----(((((...((((....))))...))))))))-------- ( -29.90, z-score = -4.51, R) >droSec1.super_16 268007 97 - 1878335 ----GGCUAAUAAGGUGUGGCAAAGGU-AACUGCCUUUGUUAACAUUCGGUAACCUUGAAUAU-----UAUGUGUGGAAAGUAAUCUCAGAGUAGAGUAAUAUAUUA ----......((((((.((((((((((-....))))))))))..........)))))).((((-----(((.(.((((......)).)).).....))))))).... ( -18.60, z-score = -0.04, R) >droSim1.chr2L 11876981 80 - 22036055 ----GGCUAAUAAGGUGUGGCAAAGAU-AACUGCCUUUGUUAACAUUCUGUAACCUUGAAUAU-----UAUGUGUGGA----AAUCUUAGAGUA------------- ----.(((..((((((.((((((((..-......))))))))((((..(((........))).-----.)))).....----.)))))).))).------------- ( -13.10, z-score = 0.38, R) >consensus ____GGCUAAUAAGGUGUGGCAAAGGU_AACUGCCUUUGUUAACAUUCGGUAACCUUGAAUAU_____UAUGUGUGGAAAGUAAUCUCAAAGUAGAGUAAUA_____ .................((((((((((.....))))))))))................................................................. ( -8.12 = -7.82 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:34:19 2011