| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,792,135 – 19,792,195 |
| Length | 60 |
| Max. P | 0.959776 |
| Location | 19,792,135 – 19,792,195 |
|---|---|
| Length | 60 |
| Sequences | 6 |
| Columns | 70 |
| Reading direction | forward |
| Mean pairwise identity | 60.82 |
| Shannon entropy | 0.71145 |
| G+C content | 0.41933 |
| Mean single sequence MFE | -14.65 |
| Consensus MFE | -5.84 |
| Energy contribution | -6.12 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.67 |
| SVM RNA-class probability | 0.959776 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19792135 60 + 22422827 ---------CACAAGUACGACAC-AACUAGCUAUAAACUAGCUAGCUUCUCAGCACAACUUAUUGUGCGU ---------..............-..(((((((.....))))))).......((((((....)))))).. ( -15.00, z-score = -2.48, R) >droAna3.scaffold_13337 15483549 67 + 23293914 AACAAAAUUUCAAUUUGUGGCACAAUGUUGCCAAAAAUGAACGAGGUGCUCUGAAAAGCCCACUCUG--- ........((((.(((.(((((......))))).)))))))((..(((..((....))..)))..))--- ( -14.10, z-score = -1.27, R) >droEre2.scaffold_4690 9994572 51 + 18748788 ---------UAAAAGUCAGAAAC-AACUGGCUAUAAACUAGCUAGGUUGUCAGCUGUGCGU--------- ---------.....(((((..((-(((((((((.....)))))).)))))...))).))..--------- ( -14.70, z-score = -2.20, R) >droYak2.chrX 10188250 67 - 21770863 ---UUUACAUAAAAGUCUCCUUUGAACUGGCUAUAAACUAGCUAGGCUGUCAGCACAACUUGCUGUGCGU ---...................(((.(((((((.....)))))))....)))(((((......))))).. ( -16.70, z-score = -1.19, R) >droSec1.super_8 2054972 60 + 3762037 ---------CAAAAGUACGGCAC-AACUGGCUAUAAAAUAGCUAGCUUCUCAACACAGCUUAUUGUGCGU ---------..........((((-((.(((((((...)))))))(((.........)))...)))))).. ( -13.90, z-score = -1.43, R) >droSim1.chrX 15258872 60 + 17042790 ---------CAAAAGAACGACAC-AACUGGCUAUAAACUAGCUAGCUUCGCAGCACAACUUAUGGUGCGU ---------..............-..(((((((.....)))))))...((((.((.......)).)))). ( -13.50, z-score = -1.29, R) >consensus _________CAAAAGUACGACAC_AACUGGCUAUAAACUAGCUAGCUUCUCAGCACAACUUAUUGUGCGU ..........................(((((((.....)))))))......................... ( -5.84 = -6.12 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:20 2011