| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,789,971 – 19,790,065 |
| Length | 94 |
| Max. P | 0.982077 |
| Location | 19,789,971 – 19,790,065 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 76.66 |
| Shannon entropy | 0.39998 |
| G+C content | 0.30658 |
| Mean single sequence MFE | -22.02 |
| Consensus MFE | -11.96 |
| Energy contribution | -12.28 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.70 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.09 |
| SVM RNA-class probability | 0.982077 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19789971 94 + 22422827 GAAAUGGUAUAGUAACUAUUUCAAUUAGUUACUGUGCUUUUUUCA-CAAGUGCUACAUUUGUCGGCUGAAUCAUUUUAUUGAUUCAUGUCGUCAU--------------- ((((.(((((((((((((.......)))))))))))))..))))(-((((((...)))))))(((((((((((......))))))).))))....--------------- ( -34.10, z-score = -7.08, R) >droEre2.scaffold_4690 9992467 104 + 18748788 GAGUUGGUAUGGUAAUUAUUUCAAUUAGCUAUUGUUCUUCUUACA-AAAGUGCUACGUUUGUCGGGUGAAUCAUUUUAUUGGCUUAUUUCAUGUAAUUGAGUAAU----- ((((..(((.(.(((((.....))))).)....((((.(((.(((-((.(.....).))))).))).)))).....)))..))))..((((......))))....----- ( -16.20, z-score = 0.25, R) >droYak2.chrX 10186037 104 - 21770863 GACAUGGUAUGGUAAUUAUUUCAAUUAACUAUUGUUCUUAUUUCC-AAAGUGCUACGUUUGUCGGGUUAAUCAUCUUAUUGGUUUAUUUCAUAUAAUUGAGUCAU----- (((.((((((((.(((.....((((.....)))).....))).))-)...)))))....(((..(((.(((((......))))).)))..))).......)))..----- ( -13.50, z-score = 0.49, R) >droSec1.super_8 2052785 110 + 3762037 GAAAUGGUAUGGUAACUAUUUCAAUUAGUUAAUGUUCUUAUUUUAACAAGCGCUACGUUUGUCCAGUGAAUCAUUUUAUUGAUUCAUUUCGUCAUCUUCUAUUUCAUCGC (((((((..(((((((((.......))))))..............(((((((...))))))))))((((((((......))))))))...........)))))))..... ( -24.70, z-score = -3.92, R) >droSim1.chrX 15256694 94 + 17042790 GAAAUGGUAUGGUAACUAUUUCAAUUAGUUAAUGUUCUUAUUUCA-CAAGCGCUACGUUUGUCCAGUGAAUCAUUUUAUUGAUUCAUUUCGUCAU--------------- (((((((.....((((((.......))))))......)))))))(-((((((...)))))))..(((((((((......))))))))).......--------------- ( -21.60, z-score = -3.24, R) >consensus GAAAUGGUAUGGUAACUAUUUCAAUUAGUUAAUGUUCUUAUUUCA_CAAGUGCUACGUUUGUCGGGUGAAUCAUUUUAUUGAUUCAUUUCGUCAU_UU___U________ ((((((((......))))))))...........(..(((........)))..)...........(((((((((......)))))))))...................... (-11.96 = -12.28 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:19 2011