| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,782,353 – 19,782,444 |
| Length | 91 |
| Max. P | 0.653793 |
| Location | 19,782,353 – 19,782,444 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 54.62 |
| Shannon entropy | 0.71764 |
| G+C content | 0.34493 |
| Mean single sequence MFE | -20.30 |
| Consensus MFE | -7.53 |
| Energy contribution | -7.40 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.653793 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19782353 91 + 22422827 -----UACGUUUCGG--UUAU---UCCAUG----AACUUCAUUUCAAAUCGAAUUGAAAUGUGU----UUUUCCACUGCGGUUUUUCAACUGCAAUUAGGGCUUUGAAA--- -----....((((((--....---(((..(----(((..((((((((......)))))))).))----))......(((((((....)))))))....)))..))))))--- ( -19.50, z-score = -1.46, R) >droSec1.super_8 2045494 105 + 3762037 UUUCCUAUGUUUUGGGUUCAUGGGUUCAUGGGAUAACUUCAUUUCAAAUCGAAUUGAAAUGCAU----UUUUCCACUGCGGUUUUUCAACUGCAAUUGGGGCUUUGAGA--- ...((((.....))))((((.((.(((((((((......((((((((......))))))))...----..))))).(((((((....)))))))..)))).)).)))).--- ( -27.10, z-score = -1.55, R) >droEre2.scaffold_4690 9985389 103 + 18748788 GUUUUUACGUUUAGA--UUAU---CCCAUG----AACUUAAUUUCGAAACUAAUUGAAAUGAAUGUCGUUUUGUACUGCGGUGUUUCAAUUGCAUUUUCGGUUUUUUUGAAU ........(((((((--..(.---.(((((----(.....(((((((......))))))).....)))).......((((((......)))))).....))..).))))))) ( -15.80, z-score = 0.21, R) >droVir3.scaffold_12970 1794605 78 - 11907090 GUGUUCACAUUCUGA----AU-----UGUG----AAUGUGAGUGUGAAUGCAAAUGAAUUUAUU--CGUUUCAUGUGAAGGAAUUGGAACUUC------------------- (..(((((((((...----..-----...)----))))))))..)..(((.(((((((....))--))))))))..((((.........))))------------------- ( -18.80, z-score = -1.75, R) >consensus GUUUUUACGUUUUGA__UUAU___UCCAUG____AACUUCAUUUCAAAUCGAAUUGAAAUGAAU____UUUUCCACUGCGGUUUUUCAACUGCAAUU_GGGCUUUGA_A___ .....................................((((((((((......)))))))))).............((((((......)))))).................. ( -7.53 = -7.40 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:19 2011