| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,775,494 – 19,775,597 |
| Length | 103 |
| Max. P | 0.654844 |
| Location | 19,775,494 – 19,775,597 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 52.41 |
| Shannon entropy | 0.82924 |
| G+C content | 0.38927 |
| Mean single sequence MFE | -24.90 |
| Consensus MFE | -4.24 |
| Energy contribution | -3.76 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.75 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.17 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.654844 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19775494 103 + 22422827 GCUGCAAAAGCAACGAUAUUCGAUAUCGAUAUUAUCGAUGACUGCAAUAGCACAGCGUACUUUCGACAUUU--UUCAAUUGGUUGCCCAACAAAGUUUGUGUAAU-------- ..((((....((.(((((.(((....)))...))))).))..))))...((((((...(((((.((.....--.))..((((....)))).)))))))))))...-------- ( -20.60, z-score = -0.25, R) >droSim1.chrX 15245905 101 + 17042790 GCUGCAACAACAGCGAUGA-CAGUAUCGAUAUUAUCGGUAACUGCGAUAGCUUC-CGUACUUUCGACAUUU--UUCAAUUGGUUGCACAACACAGUUUGUGUAAU-------- ((((......))))(.(((-.(((((.((..((((((.......))))))..))-.))))).))).)....--........(((((((((......)))))))))-------- ( -26.00, z-score = -1.75, R) >droSec1.super_8 2038725 84 + 3762037 GCUGCAACAGCAGCGAUGA-CAGUAUCGAUAUUAUCGGUAACUGCGAUAGCUUC-CGUACUGUCGACA-------------------CAACAAAGUUGGUGUAAU-------- (((((....)))))..(((-((((((.((..((((((.......))))))..))-.)))))))))(((-------------------((((...))).))))...-------- ( -30.30, z-score = -3.61, R) >droYak2.chrX 10171816 81 - 21770863 ----CAAAAGCACCGAUUA-AAGUAUCGAUAUUAUCGAUGACUUCGAUAGCUUG-CGCAA-AUUGACAUUA--UUCAAUUGG-----CGACAAAU------------------ ----...((((..((((..-....))))....((((((.....)))))))))).-(((.(-(((((.....--.)))))).)-----))......------------------ ( -20.70, z-score = -3.08, R) >droWil1.scaffold_181071 836538 111 + 1211509 GGGUCAUAGCUGACAACCUUUUAAAUUGGCCUGAUCCAU--UCAUAAUGGUCCCAUUAAAUUAAGGGAUCAACUUUGAUCAACUUGUUUCCAAGUCUUAUGAGUUAUUGUAAU ((((((..((..(............)..)).))))))((--(((((((((((((..........)))))))..........(((((....))))).))))))))......... ( -26.90, z-score = -1.67, R) >consensus GCUGCAAAAGCAACGAUGA_CAGUAUCGAUAUUAUCGAUAACUGCGAUAGCUUC_CGUACUUUCGACAUUA__UUCAAUUGG_U___CAACAAAGUUUGUGUAAU________ ...........(((......(((((((((.....)))))).))).....)))............................................................. ( -4.24 = -3.76 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:16 2011