Locus 15582

Sequence ID dm3.chrX
Location 19,759,929 – 19,760,061
Length 132
Max. P 0.631926
window21488 window21489

overview

Window 8

Location 19,759,929 – 19,760,029
Length 100
Sequences 4
Columns 100
Reading direction forward
Mean pairwise identity 67.02
Shannon entropy 0.50064
G+C content 0.44856
Mean single sequence MFE -17.86
Consensus MFE -9.80
Energy contribution -10.93
Covariance contribution 1.12
Combinations/Pair 1.17
Mean z-score -1.19
Structure conservation index 0.55
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.29
SVM RNA-class probability 0.631926
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19759929 100 + 22422827
CGGUAAUAUUGUUUACGACAUUAGUUGCCACCUUUACUUAUUUACUUACUUUACUUUGUGGAACUAAGUUCCACAUCUGGGAUGCCAAACACUCACGCUU
.((((((..((((...))))...))))))...........................((((((((...))))))))..((((.((.....))))))..... ( -19.10, z-score =  -1.64, R)
>droSim1.chrX 15234065 87 + 17042790
CGGUAAUAUCGUUUACGGCUUUAGCUUCCACAUUU-------------CUCCACUUUGUGGAACUACGUUCCACAUCUGUGCUGCCAAGCACUCGCGCUU
.((((.....((....(((....)))...))....-------------...(((..((((((((...))))))))...))).))))((((......)))) ( -21.50, z-score =  -2.16, R)
>droSec1.super_8 2023621 87 + 3762037
CGGUAAUAUCGCUUACGGUUUCAGCUUCCACCUUU-------------CUCCACUUUGUGGAACUACGUUACACUUCUGUGAUGCCAAGCACUCGCGCUU
.(((...(((((.....((..(((.((((((....-------------.........))))))))..)..))......))))))))((((......)))) ( -16.02, z-score =  -0.14, R)
>droYak2.chrX 10157936 78 - 21770863
AGCUUAAAUCGCUUACCACUCUUGUUG----------------------UCCACAAAGUGGACCUAUGUUCCACACCAGUGAUGCCAGAGUUUUCCACUU
(((.......)))....(((((.((.(----------------------(((((...))))))........(((....)))..)).)))))......... ( -14.80, z-score =  -0.83, R)
>consensus
CGGUAAUAUCGCUUACGACUUUAGCUGCCACCUUU_____________CUCCACUUUGUGGAACUACGUUCCACAUCUGUGAUGCCAAACACUCGCGCUU
.((((...........(((....))).........................(((..((((((((...))))))))...))).)))).............. ( -9.80 = -10.93 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 9

Location 19,759,949 – 19,760,061
Length 112
Sequences 3
Columns 112
Reading direction forward
Mean pairwise identity 78.95
Shannon entropy 0.27877
G+C content 0.46609
Mean single sequence MFE -23.64
Consensus MFE -17.22
Energy contribution -18.67
Covariance contribution 1.45
Combinations/Pair 1.04
Mean z-score -1.51
Structure conservation index 0.73
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.07
SVM RNA-class probability 0.529302
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19759949 112 + 22422827
UUAGUUGCCACCUUUACUUAUUUACUUACUUUACUUUGUGGAACUAAGUUCCACAUCUGGGAUGCCAAACACUCACGCUUAGCAAGUACUUGCUCCUCUGCUAACCCAGUGC
....................................((((((((...)))))))).(((((..((...........))(((((((((....)))....)))))))))))... ( -22.00, z-score =  -0.77, R)
>droSim1.chrX 15234085 99 + 17042790
-------------UUAGCUUCCACAUUUCUCCACUUUGUGGAACUACGUUCCACAUCUGUGCUGCCAAGCACUCGCGCUUAGCAAGUACUUGCUCCUUUGCUAACCAAGUGC
-------------(((((..................((((((((...))))))))...(((((((.((((......)))).)).)))))..........)))))........ ( -26.20, z-score =  -2.44, R)
>droSec1.super_8 2023641 99 + 3762037
-------------UCAGCUUCCACCUUUCUCCACUUUGUGGAACUACGUUACACUUCUGUGAUGCCAAGCACUCGCGCUUAGCAAGUACUUGCUCCUUUGCUAACCAAGUGC
-------------..((.((((((.............)))))))).(((((((....)))))))....(((((.(.(.((((((((..........)))))))))).))))) ( -22.72, z-score =  -1.32, R)
>consensus
_____________UUAGCUUCCACCUUUCUCCACUUUGUGGAACUACGUUCCACAUCUGUGAUGCCAAGCACUCGCGCUUAGCAAGUACUUGCUCCUUUGCUAACCAAGUGC
...............................(((..((((((((...))))))))...))).(((.((((......)))).))).((((((((......)).....)))))) (-17.22 = -18.67 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:12 2011