| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,738,778 – 19,738,874 |
| Length | 96 |
| Max. P | 0.901553 |
| Location | 19,738,778 – 19,738,874 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 68.44 |
| Shannon entropy | 0.49735 |
| G+C content | 0.36028 |
| Mean single sequence MFE | -18.76 |
| Consensus MFE | -10.00 |
| Energy contribution | -11.60 |
| Covariance contribution | 1.60 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.901553 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19738778 96 + 22422827 UCAAUAGAGGAGGGAAAACAAAAUGGGGAAACUCCUUUCUAAUUGGGCAUAUGCAGUAGAUAAUACUGUGAGAUAAACAAAAAAAACUAAGUCUCA------------------------ (((((..((((((((...(.....).(....))))))))).)))))......((((((.....))))))(((((................))))).------------------------ ( -20.49, z-score = -2.22, R) >droEre2.scaffold_4690 9943273 116 + 18748788 UCAAUAGAUGAGGGAAAACGAGA-AGGGAAACUC---UCUAAUUGGGCAUAUGCAGUAGAUAAUACUGUUUGAUUAACAAAAACAAAAAAAAAGCACUGUGCUACAAAAAAACUAAUGUU .((.(((.............(((-..(....)..---)))..((((((((((((((((.....))))((((.........)))).........))).)))))).))).....))).)).. ( -20.90, z-score = -2.12, R) >droYak2.chrX 10142425 110 - 21770863 UCAAUAGAUGAGGGAAAACGAAAUGGGGAAACUC---UCUAAUUGGGCAUAUGCAGUAGAUAAUACUGUGAGAUUAACAGAAA------AAAAACACUAUGCUACAAAUAAACUAAUGC- .(((((((...(......).....(((....)))---))).))))((((((.((((((.....))))))..(.....).....------........))))))................- ( -16.30, z-score = -1.30, R) >droSec1.super_8 2002707 78 + 3762037 UCAAUAGAGGAGGGAAAACCAGAUGGGGAAACUCCUUUCUAAU-GGGCAUAUGCAGUAUAUAAUACUGUGAGAAUAACA----------------------------------------- .......((((((((...((....))(....)))))))))...-........(((((((...)))))))..........----------------------------------------- ( -17.50, z-score = -1.47, R) >droSim1.chrX_random 5150412 79 + 5698898 UCAAUAGAGGAGGGAAAACCAGAUGGGGAAACUCCUUACCAAUUGGGCAUAUGCAGUAGAUACUACUGUGAGAAUAACA----------------------------------------- ......((((((......((....)).....)))))).((....))......(((((((...)))))))..........----------------------------------------- ( -18.60, z-score = -1.51, R) >consensus UCAAUAGAGGAGGGAAAACCAGAUGGGGAAACUCCUUUCUAAUUGGGCAUAUGCAGUAGAUAAUACUGUGAGAUUAACA_AAA______A____CA________________________ ((((((((((((......(......).....)))))))...)))))......((((((.....))))))................................................... (-10.00 = -11.60 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:11 2011