| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,733,274 – 19,733,413 |
| Length | 139 |
| Max. P | 0.766286 |
| Location | 19,733,274 – 19,733,413 |
|---|---|
| Length | 139 |
| Sequences | 6 |
| Columns | 147 |
| Reading direction | forward |
| Mean pairwise identity | 75.63 |
| Shannon entropy | 0.45431 |
| G+C content | 0.51015 |
| Mean single sequence MFE | -38.65 |
| Consensus MFE | -22.95 |
| Energy contribution | -23.65 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.766286 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19733274 139 + 22422827 ACACGAGGGUCAGAAGUGGUGGCAUAGACCCCACACAGAAUCC------CCAUCUACCGGCCAUUUGUUGCUGUUAGUUUACGACUCUUGUUUGCAUAUUUGCAUAGGUCGCUUCA-CCACUGCACUCCCAAUGCCCUCCUCUAAU- ....(((((.((..((((((((....((((..(((.(((.((.------....(((.((((........)))).))).....)).)))))).((((....))))..))))...)))-)))))..........))))))).......- ( -39.00, z-score = -1.86, R) >droEre2.scaffold_4690 9938080 133 + 18748788 -----GGGGUCAGAAGUGGAGGCACAGACCGCACACAGAAUCC------CAUUCUACCGGCCAUUUGUUGCUGUUAGUUUACGACUUUUGUUUGCAUAUUUGCAUAGGUCGCUUCA-CCACUGCACUCCCAAUUCCCUCUCUAUU-- -----((((((((..((((((..((.(((.(((.(((((...(------(........))...)))))))).))).))...((((((.....((((....)))).)))))))))))-)..))).)).)))...............-- ( -36.70, z-score = -1.70, R) >droYak2.chrX 10136837 140 - 21770863 ACACGGGGGUCAGAAGUGGAGGCACAGACCCCACACAGAAUCC------CAUUCUACCGGCCAUUUGUUGCUGUUAGUUUACGACUCUUGUUUGCAUAUUUGCAUAGGUCGCUUCA-CCACUGCACUCCCUGCAUUCCCACUCCAUU ....(((((((((..((((((.....((((..(((.(((.((.------....(((.((((........)))).))).....)).)))))).((((....))))..)))).)))))-)..))).))))))................. ( -38.50, z-score = -1.10, R) >droSec1.super_8 1997499 126 + 3762037 ACACGGGGGUCAGAAGUGGAGGCACAGACCCCACACAGAAUCC------CCAUCUACCGGCCAUUUGUUGCUGUUAGUUUACGACUCUUGUUUGCAUAUUUGCAUAGGUCGCUUCA-CCACUGCACUCCCAAU-------------- ....(((((((((..((((((.....((((..(((.(((.((.------....(((.((((........)))).))).....)).)))))).((((....))))..)))).)))))-)..))).))))))...-------------- ( -39.00, z-score = -1.90, R) >droSim1.chrX 15209248 126 + 17042790 ACACGGGGGUCAGAAGUGGAGGCACAGACCCCACACAGAAUCC------CCAUCUACCGGCCAUUUGUUGCUGUUAGUUUACGACUCUUGUUUGCAUAUUUGCAUAGGUCGCUUCA-CCACUGCACUCCCAAU-------------- ....(((((((((..((((((.....((((..(((.(((.((.------....(((.((((........)))).))).....)).)))))).((((....))))..)))).)))))-)..))).))))))...-------------- ( -39.00, z-score = -1.90, R) >droAna3.scaffold_13417 4868655 141 - 6960332 -----GGGGCUAGUCCCCAGACCCCAGACCCCACAGAAGAGCCGCACAGCCUCCCAUUCCCAGUUCGCUGUUGUUGGUUUACGAGGCUUGUUUGCAUAUUUUUGUUGUUUGCUUAGGUCGCUGCUGGCACCUCUCCCUCUCCCAGU- -----(((((((((.....((((.(((((...(((((((.((.(((.(((((((((.(..(((....)))..).))).....)))))))))..))...))))))).)))))....))))...)))))).)))..............- ( -39.70, z-score = -0.15, R) >consensus ACACGGGGGUCAGAAGUGGAGGCACAGACCCCACACAGAAUCC______CCAUCUACCGGCCAUUUGUUGCUGUUAGUUUACGACUCUUGUUUGCAUAUUUGCAUAGGUCGCUUCA_CCACUGCACUCCCAAU_CCCUC_C______ ....(((((((((.....(((((..............................(((.((((........)))).))).....(((.((....((((....)))).)))))))))).....))).))))))................. (-22.95 = -23.65 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:09 2011