| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,690,338 – 19,690,410 |
| Length | 72 |
| Max. P | 0.622669 |
| Location | 19,690,338 – 19,690,410 |
|---|---|
| Length | 72 |
| Sequences | 4 |
| Columns | 73 |
| Reading direction | forward |
| Mean pairwise identity | 87.41 |
| Shannon entropy | 0.20444 |
| G+C content | 0.51570 |
| Mean single sequence MFE | -20.15 |
| Consensus MFE | -18.23 |
| Energy contribution | -18.85 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.622669 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19690338 72 + 22422827 GCGUGCG-ACGAAGGUGGUGUUGGUGUGCACCGUUAUCGAACACUUUCGUAUGCCCCCGAAAAUCUCCUAAUA (((((((-((((..(((((((......)))))))..))).......))))))))................... ( -19.61, z-score = -0.97, R) >droSec1.super_8 1964088 71 + 3762037 --GUGCGUGCGAAGGUGGUGUUGGUGUGCACCGUUAUCGAACACUUUCGCAUGCCCCCGAAAAUCUCCUAAUA --..(((((((((((((((((......)))))(((....)))))))))))))))................... ( -26.30, z-score = -3.44, R) >droYak2.chrX 10109007 72 - 21770863 GUGUGUGUGCGAAGGUGGUGUUGGUGUGCACUGUUAUCGAACACUUUCCUAUGGCCCC-AGAAUUUCGUAAUA .......((((((((.((((((((((........)))).))))))..))).((....)-).....)))))... ( -15.80, z-score = 0.35, R) >droEre2.scaffold_4690 9911390 72 + 18748788 GCGUGUGUGCGAAGGUGGUGUUGGUGUGCGCCGUUAUCGAACACUCUCCUAUGCCCCC-ACAAUCUCCCAAUA ..(((.(.(((.(((.((((((((((........)))).))))))..))).))).).)-))............ ( -18.90, z-score = -0.49, R) >consensus GCGUGCGUGCGAAGGUGGUGUUGGUGUGCACCGUUAUCGAACACUUUCCUAUGCCCCC_AAAAUCUCCUAAUA ....(((((((((((((...((((((........)))))).)))))))))))))................... (-18.23 = -18.85 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:08 2011