| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,687,593 – 19,687,683 |
| Length | 90 |
| Max. P | 0.767449 |
| Location | 19,687,593 – 19,687,683 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 83.20 |
| Shannon entropy | 0.29529 |
| G+C content | 0.46943 |
| Mean single sequence MFE | -21.63 |
| Consensus MFE | -15.26 |
| Energy contribution | -14.77 |
| Covariance contribution | -0.49 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.767449 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19687593 90 + 22422827 UGCACUCCCGUUGUCC-UUGCUGUUUUUGCUU-GCCCAGUUUUCGAAAA-UGUAAACUCAUCAUAAGUGAACCAGCAUCAGCAUGUGUGCCCC---------- .((((.(..((((...-.(((((..((..(((-(...(((((.(.....-.).))))).....))))..)).))))).))))..).))))...---------- ( -21.20, z-score = -2.32, R) >droPer1.super_13 1061315 103 + 2293547 CCUGCUCUUGCUGCUCACUGUUGUUGCUGUUUUGCCCAGUUUUCGAAAAAUGUAAACUCAUCAUAAGUGGACCAGAGAGUGUAUCUGCAUCUAUGUAUGUCUC ..(((...(((.((((.(((...(..((....((...(((((.((.....)).)))))...))..))..)..))).)))))))...))).............. ( -17.80, z-score = 0.84, R) >droEre2.scaffold_4690 9908606 90 + 18748788 UGCACGCCCGCUGUCC-UUGCUGUUUUUGCUU-GCCCAGUUUUCGAAAA-UGUAAACUCAUCAUAAGUGAACCAGCAUCAGCAUGUGUACCCC---------- ((((((...((((...-.(((((..((..(((-(...(((((.(.....-.).))))).....))))..)).))))).)))).))))))....---------- ( -22.30, z-score = -2.43, R) >droYak2.chrX 10106108 90 - 21770863 UGCUCUCCUGUUGGCC-CUGCUGUUCUUGCUU-GCCCAGUUUUCGAAAA-UGUAAACUCAUCAUAAGUGAACCAGCAUCAGCAUGUGUGCCCC---------- .((.(.(.((((((..-.((((((((..((((-(...(((((.(.....-.).))))).....)))))))).))))))))))).).).))...---------- ( -18.90, z-score = -0.72, R) >droSec1.super_8 1961246 92 + 3762037 UGCACGCCCGUUGUCC-UUGCUGUUUUUGCUU-GCCCAGUUUUCGAAAA-UGUAAACUCAUCAUAAGUGAACCAGCAUCAGCAUGUGUGCCCCUG-------- .((((((..((((...-.(((((..((..(((-(...(((((.(.....-.).))))).....))))..)).))))).))))..)))))).....-------- ( -24.80, z-score = -3.04, R) >droSim1.chrX 15182965 90 + 17042790 UGCACGCCCGUUGUCC-UUGCUGUUUUUGCUU-GCCCAGUUUUCGAAAA-UGUAAACUCAUCAUAAGUGAACCAGCAUCAGCAUGUGUGCCCC---------- .((((((..((((...-.(((((..((..(((-(...(((((.(.....-.).))))).....))))..)).))))).))))..))))))...---------- ( -24.80, z-score = -3.12, R) >consensus UGCACGCCCGUUGUCC_UUGCUGUUUUUGCUU_GCCCAGUUUUCGAAAA_UGUAAACUCAUCAUAAGUGAACCAGCAUCAGCAUGUGUGCCCC__________ .((((....((((.....(((((...(..(((.....(((((.((.....)).)))))......)))..)..))))).))))....))))............. (-15.26 = -14.77 + -0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:07 2011