| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,680,188 – 19,680,238 |
| Length | 50 |
| Max. P | 0.936794 |
| Location | 19,680,188 – 19,680,238 |
|---|---|
| Length | 50 |
| Sequences | 5 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 91.60 |
| Shannon entropy | 0.14489 |
| G+C content | 0.45600 |
| Mean single sequence MFE | -15.22 |
| Consensus MFE | -14.40 |
| Energy contribution | -14.44 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.41 |
| SVM RNA-class probability | 0.936794 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19680188 50 + 22422827 ACAUGUAGAAAUUGUUAGCAUAUGUUGCCUGCGGUGGCAGGUGGCAAAAU ..((((.((.....)).)))).(((..(((((....)))))..))).... ( -16.50, z-score = -2.17, R) >droSim1.chrX 15177072 50 + 17042790 ACAUGUAGAAAUUGUUAGCAUAUGUUGCCUGCGGUGGCAGGUGGCGAAAU ..((((.((.....)).)))).(((..(((((....)))))..))).... ( -15.80, z-score = -1.93, R) >droSec1.super_8 1954016 50 + 3762037 ACAUGUAGAAAUUGUUAGCAUAUGUUGCCUGCGGUGGCAGGUGGCGAAAU ..((((.((.....)).)))).(((..(((((....)))))..))).... ( -15.80, z-score = -1.93, R) >droYak2.chrX 10098200 50 - 21770863 GCACGUAUGAAUUGUUAGCAUAUGUUGCCUGCGGUGGCAGGUGGCGAAAA ....(((((.........)))))((..(((((....)))))..))..... ( -16.30, z-score = -1.38, R) >droEre2.scaffold_4690 9901566 50 + 18748788 AGAUGUAUGAAUUGUUAACAUAUGUUGCCUGCGGUGUCAGGUGGCGAAAA ....(((((.........)))))((..((((......))))..))..... ( -11.70, z-score = -1.13, R) >consensus ACAUGUAGAAAUUGUUAGCAUAUGUUGCCUGCGGUGGCAGGUGGCGAAAU ......................(((..(((((....)))))..))).... (-14.40 = -14.44 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:06 2011