| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,671,798 – 19,671,898 |
| Length | 100 |
| Max. P | 0.956343 |
| Location | 19,671,798 – 19,671,898 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 56.24 |
| Shannon entropy | 0.83312 |
| G+C content | 0.65076 |
| Mean single sequence MFE | -41.48 |
| Consensus MFE | -14.86 |
| Energy contribution | -17.65 |
| Covariance contribution | 2.79 |
| Combinations/Pair | 1.54 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.63 |
| SVM RNA-class probability | 0.956343 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19671798 100 - 22422827 --GGCGGCAUUUGCCCGCUCGCUAACGGUGACGGCUGUGAGCAGUGAGCCAGGCGCAGGAGUUGCAAUACCCUCAGCUCCUGCCACUGCCACAUGUGCUCCU --((.(((((......((((((...((....))...)))))).(((.((.((..((((((((((.........))))))))))..)))))))..))))))). ( -45.70, z-score = -2.03, R) >droSim1.chr3R 19054111 89 - 27517382 GGAGGAGUGGUGCCUCCAUCGCUGCCCGUGAUGAUCAGCAAUCCCAAUACGCCACCUGGAGGAGUGCUGCCACCUGCCAAUGG-ACUCCU------------ ..((((((((((....((((((.....))))))..(((((.(((.......((....)).))).))))).))))..((...))-))))))------------ ( -28.00, z-score = 0.11, R) >droSec1.super_8 1945660 100 - 3762037 --GGCGGCAUUUGCCCGCUCGCUAACGGUGACGGCUGUGAGCAGUGAGCCAGGCGCAGGAGUUGCACUUCCCUCAGCUCCUGCCACUGCCGCAUGUGCUCCU --.((((((...(((.(((((((..((....))((.....)))))))))..)))((((((((((.........))))))))))...)))))).......... ( -48.90, z-score = -2.35, R) >droYak2.chrX 10089976 91 + 21770863 --GGCGGCAUUCGCUCGCUCGCUAACGGUGACGGCUGUGAGCAGUGAGCCAGGCGCAGGAGUUGCAGUGCCCUCAGCUUCUGUCCCUGCUCCU--------- --((((((..(((((.((((((...((....))...))))))))))))))(((.((((((((((.((....)))))))))))).))))))...--------- ( -45.80, z-score = -2.33, R) >droEre2.scaffold_4690 9893111 91 - 18748788 --GGCGGCAUUUGCCCGCUCGCUGACGGUCACGGCUGUGAGCAGUGAGCCAGGCGCCGGAGUUGCAGUCACCUCAGCUCCUGGCCCUGCUCCU--------- --((((((....).))))).(((.(((((....))))).)))((.((((.(((.((((((((((.((....))))))))).))))))))))))--------- ( -45.70, z-score = -1.83, R) >apiMel3.Group1 659673 93 - 25854376 --AGCGAGCCCGGCCUCCUCCCAGGCGAGGAC-------AGCCCCACGUUCGCUCGGGAGAUGGCCUCCCCCUCGGCAACGAUCAAAGCCGAAUGACGACGG --.......((((((..(((((..((((((..-------....))....))))..)))))..))))......(((((..........)))))........)) ( -34.80, z-score = -0.39, R) >consensus __GGCGGCAUUUGCCCGCUCGCUAACGGUGACGGCUGUGAGCAGUGAGCCAGGCGCAGGAGUUGCACUCCCCUCAGCUCCUGCCACUGCCCCA_________ ..(((((....((((.(((((((.(((((....)))))....)))))))..))))..(((((((.........))))))).....)))))............ (-14.86 = -17.65 + 2.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:05 2011