Locus 15574

Sequence ID dm3.chrX
Location 19,666,290 – 19,666,386
Length 96
Max. P 0.961121
window21478 window21479

overview

Window 8

Location 19,666,290 – 19,666,386
Length 96
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 98.96
Shannon entropy 0.01763
G+C content 0.50625
Mean single sequence MFE -31.78
Consensus MFE -31.06
Energy contribution -31.26
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -2.05
Structure conservation index 0.98
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.69
SVM RNA-class probability 0.961121
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19666290 96 + 22422827
AGACGAUAAUCAUAAUGAUGCCGAUGAUGAUGCGGCGGCCAUGCUAUCCUGUCAUCUUGGUCCGCUCGCAUCUCUUGGCCUUCGAGUUCCUGUUGU
..((((((.......(((.(((((.((.(((((((((((((.((......)).....))).)))).)))))))))))))..)))......)))))) ( -32.02, z-score =  -1.81, R)
>droEre2.scaffold_4690 9887827 96 + 18748788
AAACGAUAAUCAUAAUGAUGCCGAUGAUGAUGCGGCGGCCAUGCUAUCCUGUCAUCUUGGUCCGCUCGCAUCUCUUGGCCUUCGAGUUCCUGUUGU
..((((((.......(((.(((((.((.(((((((((((((.((......)).....))).)))).)))))))))))))..)))......)))))) ( -31.92, z-score =  -2.43, R)
>droYak2.chrX 10084355 96 - 21770863
AAACGAUAAUCAUAAUGAUGCCGAUGAUGAUGCGGCGGCCAUGCUAUCCUGUCAUCUUGGUCCGCUCGCAUCUCUUGGCCUUCGAGUUCCUGUUCU
...(((..(((.....)))(((((.((.(((((((((((((.((......)).....))).)))).)))))))))))))..)))............ ( -30.90, z-score =  -2.36, R)
>droSec1.super_8 1940228 96 + 3762037
AGACGAUAAUCAUAAUGAUGCCGAUGAUGAUGCGGCGGCCAUGCUAUCCUGUCAUCUUGGUCCGCUCGCAUCUCUUGGCCUUCGAGUUCCUGUUGU
..((((((.......(((.(((((.((.(((((((((((((.((......)).....))).)))).)))))))))))))..)))......)))))) ( -32.02, z-score =  -1.81, R)
>droSim1.chrX_random 5148777 96 + 5698898
AGACGAUAAUCAUAAUGAUGCCGAUGAUGAUGCGGCGGCCAUGCUAUCCUGUCAUCUUGGUCCGCUCGCAUCUCUUGGCCUUCGAGUUCCUGUUGU
..((((((.......(((.(((((.((.(((((((((((((.((......)).....))).)))).)))))))))))))..)))......)))))) ( -32.02, z-score =  -1.81, R)
>consensus
AGACGAUAAUCAUAAUGAUGCCGAUGAUGAUGCGGCGGCCAUGCUAUCCUGUCAUCUUGGUCCGCUCGCAUCUCUUGGCCUUCGAGUUCCUGUUGU
..((((((.......(((.(((((.((.(((((((((((((.((......)).....))).)))).)))))))))))))..)))......)))))) (-31.06 = -31.26 +   0.20)

alignment

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secondary structure

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dotplot

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Window 9

Location 19,666,290 – 19,666,386
Length 96
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 98.96
Shannon entropy 0.01763
G+C content 0.50625
Mean single sequence MFE -26.52
Consensus MFE -26.50
Energy contribution -26.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -0.97
Structure conservation index 1.00
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.32
SVM RNA-class probability 0.641166
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19666290 96 - 22422827
ACAACAGGAACUCGAAGGCCAAGAGAUGCGAGCGGACCAAGAUGACAGGAUAGCAUGGCCGCCGCAUCAUCAUCGGCAUCAUUAUGAUUAUCGUCU
............(((..(((..((((((((.((((.(((...((.(......)))))))))))))))).))...)))(((.....)))..)))... ( -26.50, z-score =  -0.86, R)
>droEre2.scaffold_4690 9887827 96 - 18748788
ACAACAGGAACUCGAAGGCCAAGAGAUGCGAGCGGACCAAGAUGACAGGAUAGCAUGGCCGCCGCAUCAUCAUCGGCAUCAUUAUGAUUAUCGUUU
............(((..(((..((((((((.((((.(((...((.(......)))))))))))))))).))...)))(((.....)))..)))... ( -26.50, z-score =  -1.22, R)
>droYak2.chrX 10084355 96 + 21770863
AGAACAGGAACUCGAAGGCCAAGAGAUGCGAGCGGACCAAGAUGACAGGAUAGCAUGGCCGCCGCAUCAUCAUCGGCAUCAUUAUGAUUAUCGUUU
.((((............(((..((((((((.((((.(((...((.(......)))))))))))))))).))...)))(((.....)))....)))) ( -26.60, z-score =  -1.08, R)
>droSec1.super_8 1940228 96 - 3762037
ACAACAGGAACUCGAAGGCCAAGAGAUGCGAGCGGACCAAGAUGACAGGAUAGCAUGGCCGCCGCAUCAUCAUCGGCAUCAUUAUGAUUAUCGUCU
............(((..(((..((((((((.((((.(((...((.(......)))))))))))))))).))...)))(((.....)))..)))... ( -26.50, z-score =  -0.86, R)
>droSim1.chrX_random 5148777 96 - 5698898
ACAACAGGAACUCGAAGGCCAAGAGAUGCGAGCGGACCAAGAUGACAGGAUAGCAUGGCCGCCGCAUCAUCAUCGGCAUCAUUAUGAUUAUCGUCU
............(((..(((..((((((((.((((.(((...((.(......)))))))))))))))).))...)))(((.....)))..)))... ( -26.50, z-score =  -0.86, R)
>consensus
ACAACAGGAACUCGAAGGCCAAGAGAUGCGAGCGGACCAAGAUGACAGGAUAGCAUGGCCGCCGCAUCAUCAUCGGCAUCAUUAUGAUUAUCGUCU
............(((..(((..((((((((.((((.(((...((.(......)))))))))))))))).))...)))(((.....)))..)))... (-26.50 = -26.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:04 2011