| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,657,415 – 19,657,481 |
| Length | 66 |
| Max. P | 0.972903 |
| Location | 19,657,415 – 19,657,481 |
|---|---|
| Length | 66 |
| Sequences | 6 |
| Columns | 66 |
| Reading direction | forward |
| Mean pairwise identity | 80.51 |
| Shannon entropy | 0.38000 |
| G+C content | 0.42648 |
| Mean single sequence MFE | -17.08 |
| Consensus MFE | -10.89 |
| Energy contribution | -12.37 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.629197 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19657415 66 + 22422827 CGUCCUGUACCCAUGUGUUUGUAUAUUUAAACGAAAUUAAAUGUCCAAAGGGGCAGGGAAACGGAA ((((((((.(((.....((((.((((((((......)))))))).))))))))))))...)))... ( -17.20, z-score = -1.52, R) >droSim1.chrX 15128267 66 + 17042790 CGUCCUGUGCCCAUGUGUUUGUAUAUUUAAACGAAAUUAAAUAUCCAAAGGGGCAGGGAUACGGAA .(((((.(((((.....((((.((((((((......)))))))).)))).))))))))))...... ( -20.20, z-score = -2.54, R) >droSec1.super_8 1931888 66 + 3762037 CGUCCUGUGCCCAUGUGUUUGUAUAUUUAAACGAAAUUAAAUAUCCAAAGGGGCAGGGAAACGGAA (((.((.(((((.....((((.((((((((......)))))))).)))).))))).))..)))... ( -19.00, z-score = -2.22, R) >droYak2.chrX 10075745 66 - 21770863 CGUCCUGUGCCCAUGUGUUUGUACAUUUAAACGAAAUUAAAUAUCCAAAGGGGCGGGGAAACGGAA (((.((.(((((...((..(((..((((.....))))...)))..))...))))).))..)))... ( -15.10, z-score = -0.16, R) >droEre2.scaffold_4690 9879086 66 + 18748788 CGUCCUGCUCCCAUGUGUUUGUAUAUUUAAACGAAAUUAAAUAUCCAAAGGGGCAGGGAGGCGGAA (..((((((((......((((.((((((((......)))))))).))))))))))))..)...... ( -20.70, z-score = -2.30, R) >dp4.chrXL_group1e 7522973 53 + 12523060 -----UGUGCUCGUGUAUUUGCUUGCGCAA---AAAUGAAAUACCCAAAGCUGAAGAGGGG----- -----(((((..((......))..))))).---..........(((...........))).----- ( -10.30, z-score = -0.09, R) >consensus CGUCCUGUGCCCAUGUGUUUGUAUAUUUAAACGAAAUUAAAUAUCCAAAGGGGCAGGGAAACGGAA ..((((((.(((.....((((.((((((((......)))))))).)))))))))))))........ (-10.89 = -12.37 + 1.48)
| Location | 19,657,415 – 19,657,481 |
|---|---|
| Length | 66 |
| Sequences | 6 |
| Columns | 66 |
| Reading direction | reverse |
| Mean pairwise identity | 80.51 |
| Shannon entropy | 0.38000 |
| G+C content | 0.42648 |
| Mean single sequence MFE | -15.23 |
| Consensus MFE | -10.20 |
| Energy contribution | -10.50 |
| Covariance contribution | 0.30 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.88 |
| SVM RNA-class probability | 0.972903 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19657415 66 - 22422827 UUCCGUUUCCCUGCCCCUUUGGACAUUUAAUUUCGUUUAAAUAUACAAACACAUGGGUACAGGACG .(((....(((......((((...((((((......))))))...)))).....)))....))).. ( -12.00, z-score = -0.75, R) >droSim1.chrX 15128267 66 - 17042790 UUCCGUAUCCCUGCCCCUUUGGAUAUUUAAUUUCGUUUAAAUAUACAAACACAUGGGCACAGGACG .......(((.(((((.((((.((((((((......)))))))).)))).....)))))..))).. ( -16.40, z-score = -2.67, R) >droSec1.super_8 1931888 66 - 3762037 UUCCGUUUCCCUGCCCCUUUGGAUAUUUAAUUUCGUUUAAAUAUACAAACACAUGGGCACAGGACG ...(((((...(((((.((((.((((((((......)))))))).)))).....)))))..))))) ( -16.40, z-score = -2.72, R) >droYak2.chrX 10075745 66 + 21770863 UUCCGUUUCCCCGCCCCUUUGGAUAUUUAAUUUCGUUUAAAUGUACAAACACAUGGGCACAGGACG .......(((..((((.((((.((((((((......)))))))).)))).....))))...))).. ( -14.90, z-score = -1.49, R) >droEre2.scaffold_4690 9879086 66 - 18748788 UUCCGCCUCCCUGCCCCUUUGGAUAUUUAAUUUCGUUUAAAUAUACAAACACAUGGGAGCAGGACG .........((((((((((((.((((((((......)))))))).)))).....))).)))))... ( -19.90, z-score = -3.79, R) >dp4.chrXL_group1e 7522973 53 - 12523060 -----CCCCUCUUCAGCUUUGGGUAUUUCAUUU---UUGCGCAAGCAAAUACACGAGCACA----- -----..........((((...(((((......---.(((....))))))))..))))...----- ( -11.81, z-score = -1.93, R) >consensus UUCCGUUUCCCUGCCCCUUUGGAUAUUUAAUUUCGUUUAAAUAUACAAACACAUGGGCACAGGACG .(((....(((......((((.((((((((......)))))))).)))).....)))....))).. (-10.20 = -10.50 + 0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:03 2011