| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,648,274 – 19,648,365 |
| Length | 91 |
| Max. P | 0.828420 |
| Location | 19,648,274 – 19,648,365 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 88.68 |
| Shannon entropy | 0.15137 |
| G+C content | 0.59413 |
| Mean single sequence MFE | -31.07 |
| Consensus MFE | -30.07 |
| Energy contribution | -30.40 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.828420 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19648274 91 - 22422827 CUGUAGACCUCAAGACCCGUAGUCAGUCUGCCGGCACUCACACGCUCACUCCACUCCGCUUGCGAUGUCUCAGAAGUGAGAGCGAGUGAGC (.((((((.....(((.....))).)))))).)..........((((((((..((((((((..((....))..))))).))).)))))))) ( -28.20, z-score = -0.16, R) >droSec1.super_8 1923227 82 - 3762037 --------AUGUAGACCCGUAGUCAGUCUGCCGGCACUCG-ACGCUCACUCCACUCCGCUUGCGAUGUCUCGGAAGUGAGAGCGAGUGAGC --------.....(.((.((((.....)))).))).....-..((((((((..((((((((.(((....))).))))).))).)))))))) ( -32.10, z-score = -1.63, R) >droSim1.chrX 15164040 83 - 17042790 --------CUGUAGACCCGUAGUCAGUCUGCCGGCACUCGCACGCUCACUCCACUCCGCUUGCGAUGUAUCGGAAGUGAGAGCGAGUGAGC --------(.((((((.........)))))).)((....))..((((((((..((((((((.(((....))).))))).))).)))))))) ( -32.90, z-score = -1.82, R) >consensus ________CUGUAGACCCGUAGUCAGUCUGCCGGCACUCGCACGCUCACUCCACUCCGCUUGCGAUGUCUCGGAAGUGAGAGCGAGUGAGC .............(.((.((((.....)))).)))........((((((((..((((((((.(((....))).))))).))).)))))))) (-30.07 = -30.40 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:02:00 2011