Locus 15570

Sequence ID dm3.chrX
Location 19,647,774 – 19,647,877
Length 103
Max. P 0.972837
window21471 window21472

overview

Window 1

Location 19,647,774 – 19,647,877
Length 103
Sequences 3
Columns 103
Reading direction forward
Mean pairwise identity 89.32
Shannon entropy 0.14912
G+C content 0.46168
Mean single sequence MFE -32.93
Consensus MFE -26.16
Energy contribution -25.83
Covariance contribution -0.33
Combinations/Pair 1.10
Mean z-score -2.85
Structure conservation index 0.79
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.88
SVM RNA-class probability 0.972837
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19647774 103 + 22422827
UUCCAUUUCCAUUCGCAUUCCCGUUCCCAUUCCCAGCUCUUUGCCUUCGAGAUGGGUAAUGGGUAAUGGGGUAUAGGUGUUAAUUUGUGUACAACUUGCUCUG
..............(((..((((((((((((((((.(((.........))).)))).)))))).))))))(((((.(........).)))))....))).... ( -32.90, z-score =  -3.06, R)
>droSim1.chrX 15163579 103 + 17042790
UUCCAUUCGCAUUCCCGUUCCCAUUCCCAUACCGAGCUCUUCGCCUUCGAGGUGGGUAAUGGGUAAUGGGGUAUAGGUGUUAAUUUGUGUACAACUUGCUCUG
........(((..(((((((((((((((((..(((((.....))..)))..))))).)))))).))))))(((((.(........).)))))....))).... ( -35.80, z-score =  -3.21, R)
>droSec1.super_8 1922772 97 + 3762037
------UUUCAUUCGCAUUCCCAUUCCCAUACCGAGCUCUUUGCCUUCGAGGUGGGUAAUGGGUAAUGGGGUAUAGGUGUUAAUUUGUGUAAAACUUGCUCUG
------........(((.(((((((((((((((.(.(((.........))).).))).))))).)))))))(((((((....))))))).......))).... ( -30.10, z-score =  -2.29, R)
>consensus
UUCCAUUUCCAUUCGCAUUCCCAUUCCCAUACCGAGCUCUUUGCCUUCGAGGUGGGUAAUGGGUAAUGGGGUAUAGGUGUUAAUUUGUGUACAACUUGCUCUG
............((.(((((((((((((((..(((((.....))..)))..))))).)))))).)))).))(((((((....))))))).............. (-26.16 = -25.83 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 2

Location 19,647,774 – 19,647,877
Length 103
Sequences 3
Columns 103
Reading direction reverse
Mean pairwise identity 89.32
Shannon entropy 0.14912
G+C content 0.46168
Mean single sequence MFE -27.77
Consensus MFE -19.63
Energy contribution -20.97
Covariance contribution 1.33
Combinations/Pair 1.00
Mean z-score -2.22
Structure conservation index 0.71
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.21
SVM RNA-class probability 0.596256
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19647774 103 - 22422827
CAGAGCAAGUUGUACACAAAUUAACACCUAUACCCCAUUACCCAUUACCCAUCUCGAAGGCAAAGAGCUGGGAAUGGGAACGGGAAUGCGAAUGGAAAUGGAA
((..(((.((((.........))))........(((.((.((((((.((((.(((.........))).)))))))))))).)))..)))...))......... ( -28.40, z-score =  -2.08, R)
>droSim1.chrX 15163579 103 - 17042790
CAGAGCAAGUUGUACACAAAUUAACACCUAUACCCCAUUACCCAUUACCCACCUCGAAGGCGAAGAGCUCGGUAUGGGAAUGGGAACGGGAAUGCGAAUGGAA
((..(((.((((.........))))........(((.((.((((((.((((..((((..((.....))))))..)))))))))))).)))..)))...))... ( -30.00, z-score =  -2.13, R)
>droSec1.super_8 1922772 97 - 3762037
CAGAGCAAGUUUUACACAAAUUAACACCUAUACCCCAUUACCCAUUACCCACCUCGAAGGCAAAGAGCUCGGUAUGGGAAUGGGAAUGCGAAUGAAA------
((..(((.(((...........)))........((((((.(((((.(((...(((.........)))...))))))))))))))..)))...))...------ ( -24.90, z-score =  -2.45, R)
>consensus
CAGAGCAAGUUGUACACAAAUUAACACCUAUACCCCAUUACCCAUUACCCACCUCGAAGGCAAAGAGCUCGGUAUGGGAAUGGGAAUGCGAAUGAAAAUGGAA
((..((..((((.........))))........((((((.(((((.(((...(((.........)))...))))))))))))))...))...))......... (-19.63 = -20.97 +   1.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:01:59 2011