| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,647,327 – 19,647,417 |
| Length | 90 |
| Max. P | 0.857431 |
| Location | 19,647,327 – 19,647,417 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 79.37 |
| Shannon entropy | 0.26529 |
| G+C content | 0.43796 |
| Mean single sequence MFE | -20.40 |
| Consensus MFE | -18.49 |
| Energy contribution | -18.17 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.857431 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19647327 90 + 22422827 GUGUUUUUUUUAUAGCCUCAUAUCAAGGACAGGCCCUAGAAUUGUUAACUGAUAUGGUACGGUUAUGCUAGCUCGUAGCACCGCCAAUAA (((........((((((((((((((..(((((.........)))))...))))))))...))))))((((.....))))..)))...... ( -19.30, z-score = -0.11, R) >droSec1.super_8 1922352 72 + 3762037 ---GCGUUUUUAUAGCCCCAUAUCAAGGACAGGCCCUAGAAUUGUCAACUGAUAUGGCAUGGUUAUGCUAGCUCG--------------- ---(.(((..(((((((((((((((..(((((.........)))))...))))))))...)))))))..))).).--------------- ( -23.10, z-score = -2.54, R) >droSim1.chrX 15163161 72 + 17042790 ---GCGUUUUUAUAGUCCCAUAUCAAGGACAGGCCCUAGAAUUGUCAACUGAUAUGGCAUGGUUAUGCUAGCUCG--------------- ---(.(((..((((..(((((((((..(((((.........)))))...))))))))...)..))))..))).).--------------- ( -18.80, z-score = -1.29, R) >consensus ___GCGUUUUUAUAGCCCCAUAUCAAGGACAGGCCCUAGAAUUGUCAACUGAUAUGGCAUGGUUAUGCUAGCUCG_______________ .....(((..(((((((((((((((..(((((.........)))))...))))))))...)))))))..))).................. (-18.49 = -18.17 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:01:57 2011