Locus 15568

Sequence ID dm3.chrX
Location 19,646,757 – 19,646,863
Length 106
Max. P 0.967583
window21468 window21469

overview

Window 8

Location 19,646,757 – 19,646,863
Length 106
Sequences 3
Columns 112
Reading direction forward
Mean pairwise identity 61.18
Shannon entropy 0.53282
G+C content 0.51437
Mean single sequence MFE -32.73
Consensus MFE -10.62
Energy contribution -11.08
Covariance contribution 0.46
Combinations/Pair 1.41
Mean z-score -2.95
Structure conservation index 0.32
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.78
SVM RNA-class probability 0.967583
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19646757 106 + 22422827
GAUCUGCCGUGGCUGCAUGUGCCACUCGUUAAUUGCUAA---CAUUACUCCGAGUACUCGGAGUAUGCCGAGCACUCCG---AUGUUGGAUACCCAACCGGUGGCCAUCACU
(((..((((((((.......)))))........((((..---...((((((((....)))))))).....))))..(((---..(((((....)))))))).))).)))... ( -39.60, z-score =  -3.28, R)
>droYak2.chrX 10068609 98 - 21770863
GAUGUGCCGUGUAUGCAUGUGCCAUUUGAUAAUUACUCC---CAUUACUCCGAGCAAUCCAUGCACUCCGAGUACUCCAUGUACUCCGGGUACUCCGCACU-----------
...((((.(.((((((((((((..((.((((((......---.)))).)).)))))...)))))...((((((((.....))))).))))))).).)))).----------- ( -25.90, z-score =  -2.00, R)
>droEre2.scaffold_4690 9868829 93 + 18748788
GAUGAACCGUAGAUGCAUGUGCCGCUCGAUAAUUGUUGUUGGCAUUACUCCGAGCUAUUCGAGCAAUCCGAGUACUCCGAGUACUCCGGUUCC-------------------
...((((((.((......((((((..((((....)))).))))))(((((.(((.((((((.......))))))))).))))))).)))))).------------------- ( -32.70, z-score =  -3.56, R)
>consensus
GAUGUGCCGUGGAUGCAUGUGCCACUCGAUAAUUGCUAA___CAUUACUCCGAGCAAUCCGAGCAAUCCGAGUACUCCG_GUACUCCGGAUAC_C__C______________
......(((.((((((.((....(((((......................)))))....)).))).)))((((((.....)))))))))....................... (-10.62 = -11.08 +   0.46)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 9

Location 19,646,757 – 19,646,863
Length 106
Sequences 3
Columns 112
Reading direction reverse
Mean pairwise identity 61.18
Shannon entropy 0.53282
G+C content 0.51437
Mean single sequence MFE -35.95
Consensus MFE -10.34
Energy contribution -11.57
Covariance contribution 1.23
Combinations/Pair 1.26
Mean z-score -3.05
Structure conservation index 0.29
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.63
SVM RNA-class probability 0.956263
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19646757 106 - 22422827
AGUGAUGGCCACCGGUUGGGUAUCCAACAU---CGGAGUGCUCGGCAUACUCCGAGUACUCGGAGUAAUG---UUAGCAAUUAACGAGUGGCACAUGCAGCCACGGCAGAUC
.((.(((((((((((((((....))))).(---(.((((((((((......)))))))))).))......---...........)).))))).))))).((....))..... ( -42.70, z-score =  -3.34, R)
>droYak2.chrX 10068609 98 + 21770863
-----------AGUGCGGAGUACCCGGAGUACAUGGAGUACUCGGAGUGCAUGGAUUGCUCGGAGUAAUG---GGAGUAAUUAUCAAAUGGCACAUGCAUACACGGCACAUC
-----------.((((.(.((..(((.(((((.....)))))))).(((((((((((((((..(....).---.)))))))).((....))..))))))))).).))))... ( -33.70, z-score =  -2.77, R)
>droEre2.scaffold_4690 9868829 93 - 18748788
-------------------GGAACCGGAGUACUCGGAGUACUCGGAUUGCUCGAAUAGCUCGGAGUAAUGCCAACAACAAUUAUCGAGCGGCACAUGCAUCUACGGUUCAUC
-------------------.((((((((((((.....))))))((((.((.......(((((..(((((..........)))))))))).......)))))).))))))... ( -31.44, z-score =  -3.06, R)
>consensus
______________G__G_GUAACCGGAGUAC_CGGAGUACUCGGAAUGCUCGGAUUGCUCGGAGUAAUG___ACAGCAAUUAUCGAGUGGCACAUGCAUCCACGGCACAUC
...................(((((((.(((((.....)))))))).)))).......(((((...((((..........)))).))))).((....)).............. (-10.34 = -11.57 +   1.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:01:57 2011