| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,642,744 – 19,642,837 |
| Length | 93 |
| Max. P | 0.641160 |
| Location | 19,642,744 – 19,642,837 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 64.41 |
| Shannon entropy | 0.62128 |
| G+C content | 0.41623 |
| Mean single sequence MFE | -25.68 |
| Consensus MFE | -9.51 |
| Energy contribution | -8.27 |
| Covariance contribution | -1.24 |
| Combinations/Pair | 1.76 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.641160 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19642744 93 + 22422827 UUUCGCAUCGAUUUU--CGAUUGCUGGCCGGUAUAAUUUGAAA-AUGUUACUUU-----GCUGACCGGAUUUUGGUCCUU-GGCCAGAUGUUGGCCAUGAAU--------- ....((((((.....--))).))).((.(((((((((.(....-).))))...)-----)))).))((((....)))).(-((((((...))))))).....--------- ( -24.70, z-score = -1.00, R) >droAna3.scaffold_13417 4763307 111 - 6960332 CUGCAAAUCGAUUGCAACAAGGAGCGAAAGAUUUGAAUUGAAACAAAAGAAAUUAUUUAGCUUUGGAGAUUUCAGUAUUUGAGCCUUCCGCCAAUUGCAACGUCCACGAAA .(((((.....)))))....(((..((((..((..(((((((....((....)).))))).))..))..)))).(((.(((.((.....))))).)))....)))...... ( -18.60, z-score = 0.77, R) >droEre2.scaffold_4690 9864921 94 + 18748788 UACUGUAUCGAUUUC--CGAUUGCUGGCCGGUAUAAUUUGAAA-AAAUUACUGC-----GCCACUCGGACUUUGAUCCUUUGGUCAGGUCCUGGUUGGGAUU--------- ............(((--(((((..(((((((((..((((....-))))))))).-----))))...((((((.((((....)))))))))).))))))))..--------- ( -29.50, z-score = -2.46, R) >droYak2.chrX 10064811 93 - 21770863 UUCUGUUUCGAUUUC--CGAUUGCUGGCCAGUAUAAUUUGAAA-AAGUUACUGA-----GCUGCCCGGACUUUUGUCCUU-GGCCAGGUCCUGGCCAGGAUU--------- .......(((.....--)))...((((((((..((((((....-))))))..((-----.(((((.((((....))))..-)).))).))))))))))....--------- ( -33.30, z-score = -3.17, R) >droSec1.super_8 1917760 97 + 3762037 UUUCGCAUCAAUUUU--CGAUUGCUGACCGGUAUAAUUUGAAA-A-GUAACUUUUUCAAACUGACCGAAUUUUGGUUCUU-GGCCAGAUGUUGGCCAUGAUU--------- ......(((((..((--((..((((....))))...(((((((-(-(....))))))))).....))))..)))))((.(-((((((...))))))).))..--------- ( -24.00, z-score = -1.82, R) >droSim1.chrX 15158227 93 + 17042790 UUUCGCAUCAAUUUU--CGAUUGCUGGCCGGUAUAAUUUGAAA-AAGUUACUUU-----GCUGACCGAAUUUUGGUUCUU-GGCCAGAUGUUGGCCAUGAUU--------- ......((((....(--((((..((((((((((((((((....-))))))...)-----)))((((((...))))))...-))))))..)))))...)))).--------- ( -24.00, z-score = -1.31, R) >consensus UUUCGCAUCGAUUUC__CGAUUGCUGGCCGGUAUAAUUUGAAA_AAGUUACUUU_____GCUGACCGGAUUUUGGUCCUU_GGCCAGAUGCUGGCCAUGAUU_________ .................(((.((((....))))....)))..........................((((....))))...((((((...))))))............... ( -9.51 = -8.27 + -1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:01:55 2011