| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,615,580 – 19,615,694 |
| Length | 114 |
| Max. P | 0.841399 |
| Location | 19,615,580 – 19,615,694 |
|---|---|
| Length | 114 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.19 |
| Shannon entropy | 0.28348 |
| G+C content | 0.62590 |
| Mean single sequence MFE | -41.53 |
| Consensus MFE | -32.84 |
| Energy contribution | -35.27 |
| Covariance contribution | 2.44 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.841399 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19615580 114 - 22422827 GUGGAUGCGUGGGCGCCUUGGCUCGUUUCCGCACUGGGUAACCAUCCAGGCAGUGGCCUCCGUUGCCCGUUGCACCCACAUCCCACAUCCCACAUAUCCACAUCCACAUGUGCG------ (((((((.(((((.((....))........(((.((((((((.....((((....))))..)))))))).)))...............))))).))))))).............------ ( -42.30, z-score = -1.82, R) >droEre2.scaffold_4690 9837666 92 - 18748788 -------CGUGGGCGCCUUGGCUCGGUUCCGCACUGGGUAACCAUCCAGGCUGUGGCCUCCACUGCCCGCUGCACCC---------------CAUAUCCACAUCCACAUGUGCA------ -------.((((((((((.((...((((((......)).))))..)))))).((((...)))).)))))).((((..---------------.................)))).------ ( -32.71, z-score = -0.22, R) >droSec1.super_8 1890374 114 - 3762037 GUGGGUGCGUGGGCGCCUUGGCUCGUUUCCGCACUGGGUAGCCAUCCAGGCAGUGGCCUCCAUUGCCCGCUCCACCCACAUCCCACAUCCCACAUAUCCACAUCCACAUGUGCG------ (((((((.(((((((((((((((....(((.....))).)))))...))))(((((...)))))))))))..)))))))...................(((((....)))))..------ ( -44.70, z-score = -2.32, R) >droSim1.chrX 15825081 120 - 17042790 GUGGGUGCGUGGGCGCCUUGGCUCGUUUCCGCACUGGGUAACCAUCCAGGCAGUGGCCUUCAUUGCCCGCUGCACCCACAUCCCACGUCCCACAUAUCCACAUCCACAUCCACAUGUGCG (((((((((((((((....((((.....(.((.((((((....)))))))).).)))).....))))))).)))))))).........................(((((....))))).. ( -46.40, z-score = -2.39, R) >consensus GUGGGUGCGUGGGCGCCUUGGCUCGUUUCCGCACUGGGUAACCAUCCAGGCAGUGGCCUCCAUUGCCCGCUGCACCCACAUCCCACAUCCCACAUAUCCACAUCCACAUGUGCA______ (((((((((((((((....((((.....(.((.((((((....)))))))).).)))).....))))))).))))))))...................(((((....)))))........ (-32.84 = -35.27 + 2.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:01:50 2011