| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,577,775 – 19,577,845 |
| Length | 70 |
| Max. P | 0.657327 |
| Location | 19,577,775 – 19,577,845 |
|---|---|
| Length | 70 |
| Sequences | 7 |
| Columns | 70 |
| Reading direction | forward |
| Mean pairwise identity | 73.88 |
| Shannon entropy | 0.49905 |
| G+C content | 0.43577 |
| Mean single sequence MFE | -15.44 |
| Consensus MFE | -8.85 |
| Energy contribution | -9.43 |
| Covariance contribution | 0.57 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.657327 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19577775 70 + 22422827 UAUCGAUUCAUCGAUUGGUGGUUGAUACGUCAGCCCUGGCGUGUGUAAGAGUCAAAAUCGAAAUCCAUCG .(((((....))))).(((((...((((((((....))))))))....((.......)).....))))). ( -17.70, z-score = -1.09, R) >droPer1.super_30 699153 59 - 958394 UAUCGAUGUAU--AUCGAUACCCUAU-CGACAACCCUGGCGUGUAUGAA--UGACAUUUCAGAU------ (((((((....--)))))))......-........((((.((((.....--..)))).))))..------ ( -11.10, z-score = -0.57, R) >dp4.chrXL_group1e 938841 59 + 12523060 UAUCGAUGUAU--AUCGAUACCCUAU-CGACAACCCUGGCGUGUAUGAA--UGACAUUUCAGAU------ (((((((....--)))))))......-........((((.((((.....--..)))).))))..------ ( -11.10, z-score = -0.57, R) >droSim1.chrX_random 5131373 70 + 5698898 UAUCGAUUUAUCGAUUGGUGGUUGAUACGUCAGCCCUGGCGUGUGUAAAAGUCAAAAUCGAAAUCCAGCG ....((((..((((((..((..(.((((((((....)))))))).....)..)).))))))))))..... ( -17.60, z-score = -1.52, R) >droSec1.super_8 1857330 70 + 3762037 UAUCGAUUUAUCGAUUGGUGGUUGAUACGUCAGCCCUGGCGUGUGUAAAAGUCAAAAUCGAAAUCCAGCG ....((((..((((((..((..(.((((((((....)))))))).....)..)).))))))))))..... ( -17.60, z-score = -1.52, R) >droYak2.chrX 10007993 66 - 21770863 UAUCGAUAUAUCGAUUGGCG----AUACGUCAGCCCUGGCGUGUGUAAAAGUCAAAAUCGAAACCGAGCG ..(((((.....((((.((.----((((((((....))))))))))...))))...)))))......... ( -16.90, z-score = -1.25, R) >droEre2.scaffold_4690 9804667 66 + 18748788 UAUCGAUGUAUCGAUUGGAU----UUACGUCAGCCCUGGCGUGUGUAAAAGUCAAAAUCGAAACCGAGUA ..(((..((.((((((.(((----((((((((....)))))))......))))..)))))).)))))... ( -16.10, z-score = -1.55, R) >consensus UAUCGAUGUAUCGAUUGGUGGUUGAUACGUCAGCCCUGGCGUGUGUAAAAGUCAAAAUCGAAAUCCAGCG (((((((......)))))))....((((((((....)))))))).......................... ( -8.85 = -9.43 + 0.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:01:47 2011