| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,011,882 – 12,011,989 |
| Length | 107 |
| Max. P | 0.889210 |
| Location | 12,011,882 – 12,011,989 |
|---|---|
| Length | 107 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.11 |
| Shannon entropy | 0.23152 |
| G+C content | 0.46313 |
| Mean single sequence MFE | -33.34 |
| Consensus MFE | -24.94 |
| Energy contribution | -24.65 |
| Covariance contribution | -0.29 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.889210 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12011882 107 + 23011544 GCAAUGUGCGACUAUAAAAUACGUAUGCGGCCGACGAGAAUUUAUUGACUCGACGCCCCCAGUUGG---------GGGUGUGAGUUAUAAAA-UUGAUGGCAUAAA-CUGUCUGG--UGA ((.....))(((.........((....))((((.(((...(((((.(((((.((((((((....))---------)))))))))))))))).-))).)))).....-..)))...--... ( -36.40, z-score = -3.30, R) >droSim1.chr2L 11815975 107 + 22036055 GCAAUGUGCGACUAUAAAAUACGUAUGCGGCCGACGAGAAUUUAUUGACUCGACGCCCCCAGUUGG---------GGGUGUGAGUUAUAAAA-UUGAUGGCAUAAA-CUGUCUGG--UGA ((.....))(((.........((....))((((.(((...(((((.(((((.((((((((....))---------)))))))))))))))).-))).)))).....-..)))...--... ( -36.40, z-score = -3.30, R) >droSec1.super_16 207430 107 + 1878335 GCAAUGUGCGACUAUAAAAUACGUAUGCGGCCGACGAGAAUUUAUUGACUCGACGCCCCCAGUUGG---------GGGUGUGAGUUAUAAAA-UUGAUGGCAUAAA-CUGUCUGG--UGA ((.....))(((.........((....))((((.(((...(((((.(((((.((((((((....))---------)))))))))))))))).-))).)))).....-..)))...--... ( -36.40, z-score = -3.30, R) >droYak2.chr2L 8431129 107 + 22324452 GCAAUGUGCGACUAUAAAAUACGUAUGCGGCCGACGAGAAUUUAUUGACUCGACGCCCCCAGUUGG---------GGGUGUGAGUUAUAAAA-UUGAUGGCAUAAA-CUGUCUGG--UGA ((.....))(((.........((....))((((.(((...(((((.(((((.((((((((....))---------)))))))))))))))).-))).)))).....-..)))...--... ( -36.40, z-score = -3.30, R) >droEre2.scaffold_4929 13239385 107 - 26641161 GCAAUGUGCGACUAUAAAAUACGUAUGCGGCCGGCGAGAAUUUAUUGACUCGACGCCCCCAGUUGG---------GGGUGUGAGUUAUAAAA-UUGAUGGCAUAAA-CUGUCUGG--UGA ((.....))(((.........((....))((((.(((...(((((.(((((.((((((((....))---------)))))))))))))))).-))).)))).....-..)))...--... ( -36.40, z-score = -2.79, R) >droAna3.scaffold_12916 6725071 105 - 16180835 GCAAUGUGCGACUAUAAAAUACGUAUGCGGCCGCCGAGAAUUUAUUGACUCGUCGCCCCAGGCUGG---------GGGUGUGAGUUAUAAAA-UUGAUGGUAUAAA-CUGUCUUGA---- ((..((((((...........))))))..)).((((..(((((..(((((((.((((((......)---------))))))))))))..)))-))..)))).....-.........---- ( -30.50, z-score = -1.34, R) >dp4.chr4_group2 289713 109 - 1235136 GCAAUGUGCGACUAUAAAAUACGUAUGCGGCCGGCGAGAAUUUAUUGACUCGUCGCCCCCGGCUGU---------GGGUGUGAGUUAUAAAA-UUGAUGGCAUAAA-CUGUCUCUCUUGA .(((.(.(.(((.........((....))((((.(((...(((((.((((((.(((((........---------)))))))))))))))).-))).)))).....-..))).).)))). ( -28.50, z-score = -0.38, R) >droPer1.super_8 2950686 109 + 3966273 GCAAUGUGCGACUAUAAAAUACGUAUGCGGCCGGCGAGAAUUUAUUGACUCGUCGCCCCCGGCUGU---------GGGUGUGAGUUAUAAAA-UUGAUGGCAUAAA-CUGUCUCUCUUGA .(((.(.(.(((.........((....))((((.(((...(((((.((((((.(((((........---------)))))))))))))))).-))).)))).....-..))).).)))). ( -28.50, z-score = -0.38, R) >droWil1.scaffold_180703 1189051 116 - 3946847 GCAAUGCGCGACUAUAAAAUACGUAUGCGGCCGCUGAGAAUUUAUUGACUCGCCGCCCCCAGCCGCUUUGGGUGUGAGUGUGAGUUAUAAAAAUUGAUGGCAUAAAACUGUCAUGA---- ((.....))(((.........((....))((((..((...(((((.((((((((((.(((((.....))))).)))...))))))))))))..))..))))........)))....---- ( -29.90, z-score = -0.29, R) >droVir3.scaffold_12963 13888879 105 + 20206255 GCAAUGCGCGACUAUAAAAUACGUAGUCGGCCUCUGAGAAUUUAUUGACUCGCCGCCCCGGGCAAC---------GGGUGUGAGUUAUAAAA-UUGAUGGCAUAAA-CUGUCAUGA---- .((((((.(((((((.......))))))))).........(((((.(((((((.((((..(....)---------)))))))))))))))))-)))((((((....-.))))))..---- ( -32.90, z-score = -2.08, R) >droMoj3.scaffold_6500 26591123 105 - 32352404 GCAAUGCGCGACUAUAAAAUACGUAGUCGGCCUCUGAGAAUUUAUUGACUCACCGCCCCCGGCACC---------GGGUGUGAGUUAUAAAA-UUGAUGGCAUAAA-CUGUCAUGA---- .((((((.(((((((.......))))))))).........(((((.(((((((....((((....)---------))).)))))))))))))-)))((((((....-.))))))..---- ( -33.10, z-score = -2.70, R) >droGri2.scaffold_15126 2397087 105 - 8399593 GCAAUGCGCGACUAUAAAAUACGUAGUCGGCCUCUGAGAAUUUAUUGACUCGCCGCCCCCGGCAAC---------GGGUGUGAGUUAUAAAA-UUGAUGGCAUAAA-CUGUCAUGA---- .((((((.(((((((.......))))))))).........(((((.(((((((....((((....)---------))).)))))))))))))-)))((((((....-.))))))..---- ( -34.70, z-score = -2.94, R) >consensus GCAAUGUGCGACUAUAAAAUACGUAUGCGGCCGCCGAGAAUUUAUUGACUCGACGCCCCCAGCUGG_________GGGUGUGAGUUAUAAAA_UUGAUGGCAUAAA_CUGUCUGG__UGA ((.....))(((.........((....))(((..(((...(((((.((((((.(((((.................))))))))))))))))..)))..)))........)))........ (-24.94 = -24.65 + -0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:34:16 2011