| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,570,367 – 19,570,466 |
| Length | 99 |
| Max. P | 0.688019 |
| Location | 19,570,367 – 19,570,466 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 66.62 |
| Shannon entropy | 0.61614 |
| G+C content | 0.54182 |
| Mean single sequence MFE | -33.57 |
| Consensus MFE | -12.05 |
| Energy contribution | -13.11 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.688019 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19570367 99 + 22422827 AGUUUCCAGAUUCCAGAUUCUAGUUUACAGGUUCUGGGUUCUGGGUUC--CUCGUCCUGGAUUUUGGUUGCUGGGGCGAUCCGGUGACCAGAU--CAUGGCGU .(..((((((..(((((..((.(....)))..)))))..))))))..)--..((((.(((..((((((..(((((....)))))..)))))))--)).)))). ( -41.60, z-score = -3.40, R) >droEre2.scaffold_4690 9797356 96 + 18748788 ---UUCCAGUUUCCAGGUUCCAAGUUUCAGGAUCCAUGUUCUGGGUUC--CGCGUCCUGGAUUCUGGAUUCUGGGGCGAUCCGGUGACCAGAU--CAUGGCGU ---.(((((..(((((..((((.(...(.(((((((.....)))))))--.)...).))))..)))))..)))))..((((.(....)..)))--)....... ( -35.60, z-score = -1.28, R) >droYak2.chrX 10001119 85 - 21770863 -------AGUUGCCAGGUUCCAGUUCAUAGGCUCCAGGUUCUGGGUUC--CUAAUCCUGGAUC-------CUGGGGCGAUCCGGUGACCAGAU--CAUGGCGU -------....((((...............((((((((.((..((...--.....))..)).)-------)))))))((((.(....)..)))--).)))).. ( -36.30, z-score = -2.24, R) >droSec1.super_8 1849951 85 + 3762037 --------------AGUUUCCAGGUUCCAGUUUCCAGGUUCUGGGCUC--CUCGUCCUGGAUUUUGGUUGCUGGGGCGAUCCGGUGACCAGAU--CAUGGCGU --------------.....(((.((((((((..(((((.((..(((..--...).))..)).)))))..))))))))((((.(....)..)))--).)))... ( -33.40, z-score = -1.58, R) >droSim1.chrX_random 5126856 85 + 5698898 --------------AGUUUCCAGGUUCCAGUUUCCAGGUUCUGGGCUC--CUCGUCCUGGAUUUUGGUUGCUGGGGCGAUCCGGUGACCAGAU--CAUGGCGU --------------.....(((.((((((((..(((((.((..(((..--...).))..)).)))))..))))))))((((.(....)..)))--).)))... ( -33.40, z-score = -1.58, R) >droAna3.scaffold_13417 1224225 92 + 6960332 ----CCUUGGAUACGGGUUC--GGAUACGGAUUC-AGAUACAGAUACAGAUACAGUUAAGAAUGUGGAUGCGGAUGCG----GAUGAUCCGAUGGCGCGGCUU ----((((((((.((.((((--(.((.((.((((-....((.............))...)))).)).)).))))).))----....)))))).))........ ( -21.12, z-score = 0.33, R) >consensus _______AG_UUCCAGGUUCCAGGUUACAGGUUCCAGGUUCUGGGUUC__CUCGUCCUGGAUUUUGGUUGCUGGGGCGAUCCGGUGACCAGAU__CAUGGCGU .................................(((...(((((.......((((((..(..........)..))))))........))))).....)))... (-12.05 = -13.11 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:01:45 2011