| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,561,860 – 19,561,950 |
| Length | 90 |
| Max. P | 0.567245 |
| Location | 19,561,860 – 19,561,950 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 90.13 |
| Shannon entropy | 0.16250 |
| G+C content | 0.60489 |
| Mean single sequence MFE | -33.38 |
| Consensus MFE | -27.17 |
| Energy contribution | -27.43 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.567245 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19561860 90 - 22422827 CGGGAGCGGAGCAGCGGUGUGGCCUCUCCUGUGAUAAGAAGAC---AGUCGGCCGAGUCCGCGUCCUCUGCUUUUUGUAGGUGACCCCCAGUG .((((((((((..((((..(((((....((((.........))---))..)))))...))))...))))))).......(....).))).... ( -35.50, z-score = -1.36, R) >droEre2.scaffold_4690 9789518 87 - 18748788 UGGAAGCGG---UGCGGUGUGGCCUCUACUGUGAUAAGAAGAC---AGUCGGCCGAGUCCGCGUCCUCUGCUUUUUGUAGGUGACCCCCAGUG (((......---.((((..(((((...(((((.........))---))).)))))...))))(((.(((((.....))))).)))..)))... ( -31.10, z-score = -1.39, R) >droYak2.chrX 9993974 85 + 21770863 ------CGGG--AGCGGUGUGGCCUCUCCUGUGAUAAGAAGACAGUAGUCGGCCGAGUCCGCGUCCUCUGCUUUUUGUAGGUGACCCCCAGUG ------.(((--.((((..(((((.((.((((.........)))).))..)))))...))))(((.(((((.....))))).))).))).... ( -34.70, z-score = -2.82, R) >droSec1.super_8 1841938 90 - 3762037 CGGGAGCGGAACAGCCGUGUGGCCUCUCCUGUGAUAAGAAGAC---AGUCGGCCGAGUCCGCGUCCUCUGCUUUUUGUAGGUGACCCCCAGUG .(((.(((((...((((..((...(((.((......)).))))---)..))))....)))))(((.(((((.....))))).))).))).... ( -32.20, z-score = -1.11, R) >consensus CGGGAGCGGA__AGCGGUGUGGCCUCUCCUGUGAUAAGAAGAC___AGUCGGCCGAGUCCGCGUCCUCUGCUUUUUGUAGGUGACCCCCAGUG .......((....((((..(((((....((......))..(((....))))))))...))))(((.(((((.....))))).)))..)).... (-27.17 = -27.43 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:01:44 2011