| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,561,671 – 19,561,783 |
| Length | 112 |
| Max. P | 0.893816 |
| Location | 19,561,671 – 19,561,783 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 92.12 |
| Shannon entropy | 0.13287 |
| G+C content | 0.52845 |
| Mean single sequence MFE | -38.18 |
| Consensus MFE | -35.70 |
| Energy contribution | -36.20 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.893816 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19561671 112 - 22422827 UUCCGAUUGGAAAGCCAGUCCACCUGGCGCGACAGUGAUCGCGGCAAGUACGCGCCCGAAAAUCGAAUUGGUAACAGUACGCGGUGUGGAAUCCAAUUCGAUACCAAUUGCC------ ...(((((((...(((((.....)))))((((......))))(((........))).....((((((((((..(((.(....).))).....)))))))))).)))))))..------ ( -37.70, z-score = -1.75, R) >droEre2.scaffold_4690 9789349 116 - 18748788 UUCCGAUUGGAAAGCCAGUCCACCUGGCGCGACAGUGAUCGCGGCAAGUACGCGCCCGAAAAUCGAAUUGGUAACAGUUUUUGGUGCGGAAUCCAAUUCGAUACAAAUUGCCCGCC-- ((((....)))).(((((.....)))))(((.((((..(((.(((........))))))..((((((((((.....((.......)).....))))))))))....))))..))).-- ( -37.10, z-score = -1.29, R) >droYak2.chrX 9993797 118 + 21770863 UUCCGAUUGGAAAGCCAGUCCACCUGGCGCGACAGUGAUCGCGGCAAGUACGCGCCCGAAAAUCGAAUUGGUAACAGUGCGUGGUGUGGAAUCCAAUUCGAUACCAAUUGCAAUUGCC ((((....)))).(((((.....)))))((((......))))(((((..((((((((((........)))).....))))))(((((.((((...)))).)))))........))))) ( -39.30, z-score = -1.57, R) >droSec1.super_8 1841767 112 - 3762037 UUCCGAUUGGAAAGCCAGUCCACCUGGCGCGACAGUGAUCGCGGCAAGUACGCGCCCAAAAAUCGAAUUGGUAACAGUGCGCGGUGUGGAAUCCAAUUCGAUACCAAUUGCU------ ...(((((((...(((((.....)))))((((......))))(((........))).....((((((((((..(((.(....).))).....)))))))))).)))))))..------ ( -38.60, z-score = -1.83, R) >consensus UUCCGAUUGGAAAGCCAGUCCACCUGGCGCGACAGUGAUCGCGGCAAGUACGCGCCCGAAAAUCGAAUUGGUAACAGUGCGCGGUGUGGAAUCCAAUUCGAUACCAAUUGCC______ ...(((((((...(((((.....)))))((((......))))(((........))).....((((((((((..(((.(....).))).....)))))))))).)))))))........ (-35.70 = -36.20 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:01:43 2011