| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,561,160 – 19,561,214 |
| Length | 54 |
| Max. P | 0.978197 |
| Location | 19,561,160 – 19,561,214 |
|---|---|
| Length | 54 |
| Sequences | 5 |
| Columns | 54 |
| Reading direction | reverse |
| Mean pairwise identity | 96.11 |
| Shannon entropy | 0.07011 |
| G+C content | 0.71481 |
| Mean single sequence MFE | -27.38 |
| Consensus MFE | -26.64 |
| Energy contribution | -26.60 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.99 |
| SVM RNA-class probability | 0.978197 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19561160 54 - 22422827 AACCCCGACUGCGCAGCUGAUCGCAGACAGGAGCGGAUUCAGUGCGCGCGGGGG ..(((((...(((((.((((((((........))))..))))))))).))))). ( -28.20, z-score = -3.41, R) >droEre2.scaffold_4690 9788824 54 - 18748788 AACCCCGACUGCGCUGCUGAUCGCAGCCAGGAGCGGAUUCAAUGCGCGCGGGGG ..(((((.(((.(((((.....))))))))..(((.((...)).))).))))). ( -26.70, z-score = -2.46, R) >droYak2.chrX 9993242 54 + 21770863 AACCCCGACUGCGCCGCUGAUCGCAGCCAGGAGCGGAUUCAGUGCGCGCGGGGG ..(((((...((((.(((((((((........))))..))))))))).))))). ( -27.80, z-score = -2.19, R) >droSec1.super_8 1841288 54 - 3762037 AACCCCGACUGCGCCGCUGAUCGCAGCCAGGAGCGGAUUCGGUGCGCGCGGGGG ..(((((...((((.(((((((((........))))..))))))))).))))). ( -27.10, z-score = -1.47, R) >droSim1.chrX 15082996 54 - 17042790 AACCCCGACUGCGCCGCUGAUCGCAGCCAGGAGCGGAUUCGGUGCGCGCGGGGG ..(((((...((((.(((((((((........))))..))))))))).))))). ( -27.10, z-score = -1.47, R) >consensus AACCCCGACUGCGCCGCUGAUCGCAGCCAGGAGCGGAUUCAGUGCGCGCGGGGG ..(((((...((((.(((((((((........))))..))))))))).))))). (-26.64 = -26.60 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:01:42 2011