| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,539,982 – 19,540,033 |
| Length | 51 |
| Max. P | 0.528783 |
| Location | 19,539,982 – 19,540,033 |
|---|---|
| Length | 51 |
| Sequences | 4 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 68.85 |
| Shannon entropy | 0.50923 |
| G+C content | 0.41118 |
| Mean single sequence MFE | -10.19 |
| Consensus MFE | -4.72 |
| Energy contribution | -4.78 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.528783 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19539982 51 - 22422827 UUAAGCGAACUGAACAAUAUACCAUUCCAUGGUCUAGUCGGUUCGUCCAGC ....(((((((((....((.(((((...))))).)).)))))))))..... ( -15.80, z-score = -3.80, R) >droSim1.chrX_random 5107270 50 - 5698898 UUAAGCGAACUGAACAAUA-AAUAAUCCAUGGUCUAGUCGGUUCGGCCAGC .....((((((((......-.((.....)).......))))))))...... ( -9.04, z-score = -0.72, R) >droSec1.super_8 1820240 50 - 3762037 UUAAGCGAACUGAACAAUA-AAUAAUCCAUGGUCUAGUCGGUUCGGCCAGC .....((((((((......-.((.....)).......))))))))...... ( -9.04, z-score = -0.72, R) >droAna3.scaffold_13417 5775124 51 + 6960332 UUUGGUAAAGAAGACUUUACAUAUUUCCACUUUCAAGUGCAAUUAUUUGGC ....((((((....))))))............(((((((....))))))). ( -6.90, z-score = -0.50, R) >consensus UUAAGCGAACUGAACAAUA_AAUAAUCCAUGGUCUAGUCGGUUCGGCCAGC .....((((((((........................))))))))...... ( -4.72 = -4.78 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:01:40 2011