| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,535,401 – 19,535,521 |
| Length | 120 |
| Max. P | 0.694476 |
| Location | 19,535,401 – 19,535,521 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.92 |
| Shannon entropy | 0.28473 |
| G+C content | 0.49898 |
| Mean single sequence MFE | -35.10 |
| Consensus MFE | -26.96 |
| Energy contribution | -28.38 |
| Covariance contribution | 1.42 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.694476 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19535401 120 - 22422827 GUGGUCUGGUCUGGUUCUUUAUUUGAUCCGCUCGCCACUUCGCUGCACUGGCCGUGCCAAGUGUACUGGGUGGAUCUGUAUUUAUAUCUGUGUGCCGGGACUUUACCUGCAAAACAAUUU (((((..(((((.(..........(((((((((((......))(((((((((...))).))))))..))))))))).((((..........))))).)))))..))).)).......... ( -36.50, z-score = -1.48, R) >droSim1.chrX_random 5103823 119 - 5698898 GUGGUCUGGUCU-GUUCUUUAAUUGAUCCGCUCGCCACUUCGUUGCACUGGCCGUGCCAAGUGGACUGGGUGGAUCUGUACUUGUAUUUGUGUGCCGGGACUUUACCUGCGAAACAAUUU (((((..(((((-...........(((((((((.((((((....((((.....)))).))))))...))))))))).((((..........))))..)))))..))).)).......... ( -38.90, z-score = -1.93, R) >droSec1.super_8 1815414 119 - 3762037 GUGGUCUGGUCU-GUUCUUUAAUUGAUCCGCUCGCCACUUCGUUGCACUGGCCGUGCCAAGUGGACUGGGUGGAUCUGUAUUUGUAUUUGUGUGCCGGGACUUUACCUGCGAAACAAUUU (((((..(((((-...........(((((((((.((((((....((((.....)))).))))))...))))))))).......((((....))))..)))))..))).)).......... ( -37.80, z-score = -1.70, R) >droYak2.chrX 9968167 91 + 21770863 GUGGUCUGGUCU-GUUCUUUAUUUGAUCCGCUC----------------------GCCAAGGGGGCUGGGUGGAUCUG------UAUCUGUGUGCCGGGACUUUACCUGCGAAACAAUUU (((((..(((((-...........(((((((((----------------------(((.....))).))))))))).(------(((....))))..)))))..))).)).......... ( -29.60, z-score = -1.44, R) >droEre2.scaffold_4690 9763593 113 - 18748788 GUGGUCUGGUCU-GUUCUUUAUGUGAUCCGCUUGCCAUUUCGUUGCACUGACCGUGCCAAGUGGGCUAGGUGGAUCUU------UAUCUGUGUGCCGGGACUUUACCUGCGAAAUAAUUU (((((..((((.-...........((((((((((((....(...((((.....))))...)..))).)))))))))..------...(((.....)))))))..))).)).......... ( -32.70, z-score = -1.03, R) >consensus GUGGUCUGGUCU_GUUCUUUAUUUGAUCCGCUCGCCACUUCGUUGCACUGGCCGUGCCAAGUGGACUGGGUGGAUCUGUA_UU_UAUCUGUGUGCCGGGACUUUACCUGCGAAACAAUUU (((((..((((.............((((((((((((((((....((((.....)))).))))))..))))))))))...........(((.....)))))))..))).)).......... (-26.96 = -28.38 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:01:39 2011