| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,526,026 – 19,526,140 |
| Length | 114 |
| Max. P | 0.859364 |
| Location | 19,526,026 – 19,526,140 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 134 |
| Reading direction | reverse |
| Mean pairwise identity | 63.37 |
| Shannon entropy | 0.61426 |
| G+C content | 0.52349 |
| Mean single sequence MFE | -38.42 |
| Consensus MFE | -14.18 |
| Energy contribution | -17.14 |
| Covariance contribution | 2.96 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.859364 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19526026 114 - 22422827 -------------------UAACGAGAC-CGAGCAGCAGUAACGAGUGAUGGUGCGGCUCGAGAUCUCGUUAGUUCUCGCAGUAACGGACAUCGGAUAUGGGGCAUCGUGUUGAAGAUGGUCAGUACAGUUAGG -------------------(((((((((-(((((.(((.((........)).))).))))).).))))))))...((.((.(((..(..((((.(((((((....)))))))...))))..)..))).)).)). ( -37.10, z-score = -1.58, R) >droSim1.chrX 15073375 114 - 17042790 -------------------UAACGAGAC-CGAGCAGCAGUAACGAGUAAUGGUGCUGCUCGAGUUCUCGUUAGUUCUCGCAGUAACGGACAUCGGAUAUGGGGCAUCGUGUUGAAGAUGGUCAGUACAGUUAGG -------------------(((((((((-(((((((((.((........)).))))))))).).))))))))...((.((.(((..(..((((.(((((((....)))))))...))))..)..))).)).)). ( -41.70, z-score = -3.25, R) >droSec1.super_8 1806510 114 - 3762037 -------------------UAACGAGAC-CGAGCAGCAGUAACGAGUAAUGGUGCUGCUCGAGAUCUCGUUAGUUCUCGCAGUAACGGACAUCGGAUAUGGGGCAUCGUGUUGAAGAUGGUCAGUACAGUUAGG -------------------(((((((((-(((((((((.((........)).))))))))).).))))))))...((.((.(((..(..((((.(((((((....)))))))...))))..)..))).)).)). ( -41.70, z-score = -3.27, R) >droYak2.chrX 9958695 127 + 21770863 UAACGAGACCAUUUUGCAAUGGCUGGUUGCGAGCGGAGGGGACGAGUGAUGGUGCGGCUAGAGUUCUCGUUAGUUGUCGUAGUCA-------CGGAUAUGGGGCAUAGUGUUGAAGAUGGUCAGUACAGUUGAA ......(((((((((.((((..(((((((((.((...(....)..)).....))))))))).((((.(((......((((....)-------)))..))))))).....)))))))))))))............ ( -34.90, z-score = -0.22, R) >droAna3.scaffold_13417 1170960 99 - 6960332 ----------------------------ACGUACACUGUGCGACAUAAAUGGAACUUCGAGGGG----GUCGCCUCUAACGGUGAAGCCCCUCCGAACUGCCAGAUGGUGGUGGAGGUGGGUGGAGGAGGG--- ----------------------------((.(((.((.(((.((.....(((...(((((((((----.(((((......)))))..))))).))))...)))....)).))).))))).)).........--- ( -36.70, z-score = -0.90, R) >consensus ___________________UAACGAGAC_CGAGCAGCAGUAACGAGUAAUGGUGCUGCUCGAGAUCUCGUUAGUUCUCGCAGUAACGGACAUCGGAUAUGGGGCAUCGUGUUGAAGAUGGUCAGUACAGUUAGG ...................((((((((..(((((((((.((........)).)))))))))...))))))))............................((.((((........)))).))............ (-14.18 = -17.14 + 2.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:01:38 2011