| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,501,860 – 19,501,928 |
| Length | 68 |
| Max. P | 0.559927 |
| Location | 19,501,860 – 19,501,928 |
|---|---|
| Length | 68 |
| Sequences | 4 |
| Columns | 68 |
| Reading direction | reverse |
| Mean pairwise identity | 84.34 |
| Shannon entropy | 0.24416 |
| G+C content | 0.29702 |
| Mean single sequence MFE | -14.92 |
| Consensus MFE | -11.32 |
| Energy contribution | -11.95 |
| Covariance contribution | 0.63 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.559927 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19501860 68 - 22422827 UAUUUGCUGGUUAAAUAUGUGCAUAUGUAUGUAUGUAUGUACGAUCCUAGCGCACUUAUUUGUUUAAA .....(((((.....(((((((((((....))))))))))).....)))))................. ( -15.40, z-score = -1.24, R) >droEre2.scaffold_4690 9730022 59 - 18748788 UAUUUGCUGUGUAAAUAUGUACA---------ACAAAUGUAUGAUCUUAGCGUACUUAUUUGUUUAAA (((((((...))))))).....(---------(((((((((((.......)))))..))))))).... ( -8.50, z-score = -0.33, R) >droSec1.super_8 1782453 64 - 3762037 UAUUUGCUGGUUAAAUAUGUGCA----UAUGUAUGUAUGUACGAUACCAGCGCACUUAUUUGUUUAAA .....((((((......((((((----(((....)))))))))..))))))................. ( -17.90, z-score = -2.36, R) >droSim1.chrX 15059951 64 - 17042790 UAUUUGCUGGUUAAAUAUGUGCA----UAUGUAUGUAUGUACGAUACCAGCGCACUUAUUUGUUUAAA .....((((((......((((((----(((....)))))))))..))))))................. ( -17.90, z-score = -2.36, R) >consensus UAUUUGCUGGUUAAAUAUGUGCA____UAUGUAUGUAUGUACGAUACCAGCGCACUUAUUUGUUUAAA .....((((((...(((((((((......))))))))).......))))))................. (-11.32 = -11.95 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:01:37 2011