| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,500,304 – 19,500,382 |
| Length | 78 |
| Max. P | 0.976935 |
| Location | 19,500,304 – 19,500,382 |
|---|---|
| Length | 78 |
| Sequences | 5 |
| Columns | 88 |
| Reading direction | reverse |
| Mean pairwise identity | 87.20 |
| Shannon entropy | 0.21275 |
| G+C content | 0.29513 |
| Mean single sequence MFE | -11.84 |
| Consensus MFE | -11.66 |
| Energy contribution | -11.46 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.96 |
| SVM RNA-class probability | 0.976935 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19500304 78 - 22422827 --------UUUAAUUUUGCUCGCAGAGACCAGAUUUUAAUAUCUUAUCUCAUUAUCAA-CAAUUACA-UUUUUCUGCUCAGCUAGAAA --------.....(((((((.(((((((..((((......))))((......))....-........-..)))))))..))).)))). ( -10.20, z-score = -0.95, R) >droSim1.chrX 15058510 78 - 17042790 --------UUUAAUAUUACUCGCCGAGACCAGAUUUUAAUAUCUUAUCUCAUUAUCAA-CAAUUACA-UUUUUCUGCUCAGGUAGAAA --------................((((..((((......))))..))))........-........-..(((((((....))))))) ( -13.10, z-score = -3.01, R) >droSec1.super_8 1781000 80 - 3762037 --------UUUAAUAUUACUCGCAGAGACCAGAUUUUAAUAUCUUAUCUCAUUAUCAACCAAUUACAUUUUUUCUGCUCAGGUAGAAA --------................((((..((((......))))..))))....................(((((((....))))))) ( -13.00, z-score = -2.82, R) >droYak2.chrX 9934065 78 + 21770863 --------UUUAAUACUACUCGCAGAGACCAGAUUUUAAUAUCUUAUCUCACUAUCAA-CAAUUACA-UUUUUCUGCUUAGGUAGGAA --------................((((..((((......))))..))))........-........-..(((((((....))))))) ( -12.50, z-score = -2.11, R) >droEre2.scaffold_4690 9728365 86 - 18748788 UUUAAUAUUCUCAACUUGCUGCCAGAGACCAGAUUUUAAUAUCUUAUCUUAUUAUCAA-CAAUUACA-UUUUUCUGCUUAGGUAGGAA ..................(((((.(((..((((...(((((........)))))....-........-....))))))).)))))... ( -10.41, z-score = -0.06, R) >consensus ________UUUAAUAUUACUCGCAGAGACCAGAUUUUAAUAUCUUAUCUCAUUAUCAA_CAAUUACA_UUUUUCUGCUCAGGUAGAAA ........................((((..((((......))))..))))....................(((((((....))))))) (-11.66 = -11.46 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:01:36 2011